当前解析结果
SmilChr07G000032| 统一新 Gene ID | SmilChr07G000032 |
|---|---|
| 名称 | SmilChr07G000032 |
| 描述 | uncharacterized SmilChr07G000032 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 147666 - 149768 / + |
| NCBI Gene ID | LOC130991222 |
|---|---|
| GeneID | 130991222 |
| locus_tag | - |
| NCBI Name | LOC130991222 |
| 原始查询 | SmilChr07G000032 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892]; symbol=AT1G30130; hit=AT1G30130; species=arabidopsis; confidence=high |
| 产物 | DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892]; symbol=AT1G30130; hit=AT1G30130; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G30130 (AT1G30130)DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892] identity=51.1; qcov=0.988; evalue=2.96e-109; confidence=high |
| Rice | Os07g0153300- identity=50.9; qcov=0.495; evalue=3.46e-47; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07103 (DUF1365) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991222 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057771311.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057771311.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057771311.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771311.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771311.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:147770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B122 |
Chr7:147811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,B94,C52 |
Chr7:147876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:147900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:147971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B126,B75,C81 |
Chr7:148266 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | A25 |
Chr7:148266 |
GA |
G |
1bp_deletion | CDS_variant | 1 | A25 |
Chr7:149073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:149340 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A1,B120,B5,B77,C61 |
Chr7:149340 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A1,B120,B5,B77,C61 |
Chr7:149462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:149470 |
A |
ACT |
2bp_insertion | frameshift_variant | 1 | B133 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771311.1PF07103
DUF1365 99-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771311.1 |
Pfam | PF07103 |
DUF1365 | Family | 99 | 261 | 1.8e-31 | 110.3 | Protein of unknown function (DUF1365) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。