当前解析结果
SmilChr07G000033| 统一新 Gene ID | SmilChr07G000033 |
|---|---|
| 名称 | SmilChr07G000033 |
| 描述 | uncharacterized SmilChr07G000033 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 150049 - 152256 / - |
| NCBI Gene ID | LOC130991223 |
|---|---|
| GeneID | 130991223 |
| locus_tag | - |
| NCBI Name | LOC130991223 |
| 原始查询 | SmilChr07G000033 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892]; symbol=AT1G30130; hit=AT1G30130; species=arabidopsis; confidence=high |
| 产物 | DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892]; symbol=AT1G30130; hit=AT1G30130; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G30130 (AT1G30130)DUF1365 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839892] identity=48.3; qcov=0.997; evalue=5.59e-102; confidence=high |
| Rice | Os07g0153300- identity=48.9; qcov=0.553; evalue=1.19e-49; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07103 (DUF1365) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991223 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057771312.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057771312.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057771312.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771312.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771312.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:150253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B89,C5,D5 |
Chr7:150261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,C34,D2 |
Chr7:150265 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:150291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:150778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B89,C5,D10,D11,D5 |
Chr7:150797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr7:150838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr7:150842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr7:151043 |
C |
CT |
1bp_insertion | frameshift_variant | 11 | A21,B115,B20,B32,B35,B44,B5,B50,B94,C15,C52 |
Chr7:151941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B106,C87 |
Chr7:151957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C59,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771312.1PF07103
DUF1365 94-256 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771312.1 |
Pfam | PF07103 |
DUF1365 | Family | 94 | 256 | 8.6e-37 | 127.7 | Protein of unknown function (DUF1365) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。