当前解析结果
SmilChr07G000043| 统一新 Gene ID | SmilChr07G000043 |
|---|---|
| 名称 | SmilChr07G000043 |
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 183907 - 185313 / + |
| NCBI Gene ID | LOC130991233 |
|---|---|
| GeneID | 130991233 |
| locus_tag | - |
| NCBI Name | LOC130991233 |
| 原始查询 | SmilChr07G000043 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 产物 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| Arabidopsis | AT4G33430 (BAK1)BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480] identity=49; qcov=0.909; evalue=2.56e-41; confidence=medium |
| Rice | Os08g0174700 (BAK1)- identity=47.4; qcov=1.07; evalue=9.23e-41; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991233 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771324.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057771324.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771324.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771324.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771324.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:184464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr7:184465 |
T |
TC |
1bp_insertion | frameshift_variant | 24 | A2,B1,B113,B122,B126,B140,B16,B24,B37,B42,B43,B52,B66,B75,C14,C21,C30,C43,C48,C71,C74,C76,C81,D5 |
Chr7:184480 |
CAG |
C |
2bp_deletion | frameshift_variant | 96 | A1,A18,A20,A21,A23,A25,A3,B10,B104,B105,B107,B111,B112,B113,B118,B121,B122,B125,B13,B131,B132,B133,B137,B138,B140,B21,B25,B26,B28,B32,B33,B34,B44,B50,B51,B55,B59,B6,B61,B66,B67,B68,B69,B70,B72,B74,B81,B83,B84,B85,B88,B9,B94,B95,B98,C12,C16,C20,C22,C29,C33,C36,C39,C4,C40,C41,C44,C46,C47,C48,C49,C5,C52,C56,C58,C61,C64,C66,C67,C69,C7,C70,C71,C72,C73,C74,C76,C79,C80,C83,C84,C86,C87,D1,D6,D7 |
Chr7:184521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:184728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,C5 |
Chr7:184730 |
T |
TG |
1bp_insertion | frameshift_variant | 9 | A20,B20,B5,B56,B87,B96,B99,C15,C53 |
Chr7:184776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:184802 |
T |
TTC |
2bp_insertion | frameshift_variant | 3 | B10,B132,B35 |
Chr7:184802 |
T |
TTC |
2bp_insertion | CDS_variant | 3 | B10,B132,B35 |
Chr7:184808 |
GCA |
G |
2bp_deletion | frameshift_variant | 3 | B10,B132,B35 |
Chr7:184808 |
GCA |
G |
2bp_deletion | CDS_variant | 3 | B10,B132,B35 |
Chr7:184832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B89,C5,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771324.1PF00069
Pkinase 9-123 aa
PF07714
PK_Tyr_Ser-Thr 13-125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771324.1 |
Pfam | PF00069 |
Pkinase | Domain | 9 | 123 | 9.9e-08 | 32.4 | Protein kinase domain |
XP_057771324.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 13 | 125 | 1.1e-07 | 32.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。