当前解析结果
SmilChr07G000050| 统一新 Gene ID | SmilChr07G000050 |
|---|---|
| 名称 | SmilChr07G000050 |
| 描述 | probable inorganic phosphate transporter 1-7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 209201 - 212035 / - |
| NCBI Gene ID | LOC130991239 |
|---|---|
| GeneID | 130991239 |
| locus_tag | - |
| NCBI Name | LOC130991239 |
| 原始查询 | SmilChr07G000050 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inorganic phosphate transporter 1-7 |
| 产物 | probable inorganic phosphate transporter 1-7 |
| Arabidopsis | AT3G54700 (PHT1;7)phosphate transporter 1;7 [Source:NCBI gene (formerly Entrezgene);Acc:824635] identity=79.7; qcov=0.992; evalue=0; confidence=high |
| Rice | Os04g0186400 (PT4)- identity=71.5; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0005315 (phosphate transmembrane transporter activity); GO:0006817 (phosphate ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771331.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057771331.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771331.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771331.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771331.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:209567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:209575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:209650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B106,B121,B36,C19 |
Chr7:209686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:209884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,C79 |
Chr7:209935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:209944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:210097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,A7,B61,C30,C31 |
Chr7:210235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr7:210268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:210400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr7:210462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B122,B33,B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771331.1PF00083
Sugar_tr 26-514 aa
PF07690
MFS_1 44-455 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771331.1 |
Pfam | PF00083 |
Sugar_tr | Family | 26 | 514 | 7.4e-49 | 167.5 | Sugar (and other) transporter |
XP_057771331.1 |
Pfam | PF07690 |
MFS_1 | Family | 44 | 455 | 1.7e-24 | 87.2 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。