当前解析结果
SmilChr07G000058| 统一新 Gene ID | SmilChr07G000058 |
|---|---|
| 名称 | SmilChr07G000058 |
| 描述 | RING-H2 finger protein ATL16-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 262577 - 264422 / + |
| NCBI Gene ID | LOC130991241 |
|---|---|
| GeneID | 130991241 |
| locus_tag | - |
| NCBI Name | LOC130991241 |
| 原始查询 | SmilChr07G000058 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL16-like |
| 产物 | RING-H2 finger protein ATL16-like |
| Arabidopsis | AT5G43420 (AT5G43420)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834362] identity=52.4; qcov=0.903; evalue=3.59e-92; confidence=high |
| Rice | Os02g0820200- identity=40.1; qcov=0.871; evalue=1.81e-60; confidence=medium |
| GO | GO:0016567 (protein ubiquitination); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991241 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771335.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057771335.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771335.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771335.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771335.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:263120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:263171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C85 |
Chr7:263176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,C41,C72 |
Chr7:263183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr7:263192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B42,B71,B88,C82 |
Chr7:263198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B126,B13,C18,C55 |
Chr7:263273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,B89 |
Chr7:263318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:263353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:263383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:263405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B108,C29 |
Chr7:263460 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B129,B137,B55,C23,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771335.1PF17123
zf-RING_11 127-156 aa
PF13639
zf-RING_2 127-170 aa
PF13445
zf-RING_UBOX 128-167 aa
PF00097
zf-C3HC4 128-169 aa
PF13923
zf-C3HC4_2 128-169 aa
PF12678
zf-rbx1 141-170 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771335.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 127 | 156 | 9.4e-11 | 41.9 | RING-like zinc finger |
XP_057771335.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 127 | 170 | 2.9e-13 | 50.6 | Ring finger domain |
XP_057771335.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 128 | 167 | 1.3e-05 | 25.8 | RING-type zinc-finger |
XP_057771335.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 128 | 169 | 1e-06 | 29.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057771335.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 128 | 169 | 1.9e-08 | 34.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057771335.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 141 | 170 | 3.7e-09 | 37.4 | RING-H2 zinc finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。