Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000062`

染色体: Chr07 坐标: 279241-287661 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000062`
名称	SmilChr07G000062
描述	1-aminocyclopropane-1-carboxylate oxidase homolog 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	279241 - 287661 / `-`

ID 对照

NCBI Gene ID	`LOC130991252`
GeneID	`130991252`
locus_tag	`-`
NCBI Name	`LOC130991252`
原始查询	`SmilChr07G000062`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1-aminocyclopropane-1-carboxylate oxidase homolog 1-like
产物	1-aminocyclopropane-1-carboxylate oxidase homolog 1-like
Arabidopsis	`AT1G06620` (AT1G06620) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837171] identity=49.4; qcov=0.868; evalue=3.61e-121; confidence=high
Rice	`Os03g0690500` - identity=42.9; qcov=0.893; evalue=7.06e-98; confidence=medium
GO	-
KEGG	-
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:130991252

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771345.1`
2	Cytosol	细胞质基质	1.00000	`XP_057771345.1`
3	Nucleus	细胞核	0.00000	`XP_057771345.1`
4	Chromosome	染色体	0.00000	`XP_057771345.1`
5	Centromere	着丝粒	0.00000	`XP_057771345.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:279406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr7:279606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B77,C23,C61,C62,C71
`Chr7:279607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B77,C23,C61,C62,C71
`Chr7:279613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B77,C23,C61,C71
`Chr7:279619`	`TC`	`T`	1bp_deletion	frameshift_variant	1	D10
`Chr7:279619`	`TC`	`T`	1bp_deletion	CDS_variant	1	D10
`Chr7:286597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B95
`Chr7:286599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B122,B78
`Chr7:286664`	`CG`	`C`	1bp_deletion	frameshift_variant	3	B46,B7,B93
`Chr7:286664`	`CG`	`C`	1bp_deletion	CDS_variant	3	B46,B7,B93
`Chr7:286812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,D10
`Chr7:286874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771345.1

410 aa

205

410

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 108-205 aa PF03171 2OG-FeII_Oxy 260-355 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771345.1`	Pfam	`PF14226`	DIOX_N	Family	108	205	1.1e-19	71.9	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057771345.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	260	355	2.5e-28	99.1	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915362.1
TTTGTAGAAACAGATAGAAAAAGAAACAGATCCAAAAACATCAGTAAAGCCAAAAGGAAATGGCAGATTCATCAGCTGTTGATCACCAATACGATCGAATTGAAATGCTCAAAGCTTTCGACGAAACGAAAGCCGGCGCCAAAGGCCTCAACGATTCAGGTCTGTTCAAACTCCCAGAAATCTTTGAAAGTAAAGCAAACAATTCCTCAGAAGCCAACCACCAAAATGAAAGATCTGAAATGCTGAAAGCCTTCGACGAA...

CDS

1 records

下载 CDS FASTA

LOC130991252
ATGGCAGATTCATCAGCTGTTGATCACCAATACGATCGAATTGAAATGCTCAAAGCTTTCGACGAAACGAAAGCCGGCGCCAAAGGCCTCAACGATTCAGGTCTGTTCAAACTCCCAGAAATCTTTGAAAGTAAAGCAAACAATTCCTCAGAAGCCAACCACCAAAATGAAAGATCTGAAATGCTGAAAGCCTTCGACGAAACAAAATCCGGTGTGAAAGGCCTAGTAGACTCGGGATTATCGAAAATACCTCAAATATT...

Protein

1 records

下载 Protein FASTA

XP_057771345.1
MADSSAVDHQYDRIEMLKAFDETKAGAKGLNDSGLFKLPEIFESKANNSSEANHQNERSEMLKAFDETKSGVKGLVDSGLSKIPQIFVRSSGELAQELTHNKTAEAEVPLIDLTGIYNPERRDRIVEEVRIASETWGFFQVTNHGIPQIIIDEMIDGVNKFNDMAAEEKRKYYTRDPKRRVRFSTNYDLFNSKTANWRDTLGISFVEEIPSDELPAPCRESALNYSKHVVILGGILLELVSEALGLKPDYLKSMKCANGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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