当前解析结果
SmilChr07G000079| 统一新 Gene ID | SmilChr07G000079 |
|---|---|
| 名称 | SmilChr07G000079 |
| 描述 | ethylene receptor 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 375452 - 379651 / - |
| NCBI Gene ID | LOC130991271 |
|---|---|
| GeneID | 130991271 |
| locus_tag | - |
| NCBI Name | LOC130991271 |
| 原始查询 | SmilChr07G000079 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene receptor 2-like |
| 产物 | ethylene receptor 2-like |
| Arabidopsis | AT3G04580 (EIN4)Signal transduction histidine kinase, hybrid-type, ethylene sensor [Source:NCBI gene (formerly Entrezgene);Acc:819614] identity=55.4; qcov=0.982; evalue=0; confidence=high |
| Rice | Os04g0169100 (ETR2)- identity=51.8; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0005515 (protein binding); GO:0005783 (endoplasmic reticulum); GO:0005789 (endoplasmic reticulum membrane); GO:0009723 (response to ethylene); GO:0038199 (ethylene receptor activity); GO:0051740 (ethylene binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00072 (Response_reg); PF00512 (HisKA); PF01590 (GAF); PF25487 (ETR1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991271 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057771361.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057771361.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057771361.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771361.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771361.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:375765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B47,C71,C83 |
Chr7:375780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:375796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B121,B126,B14 |
Chr7:375797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B117,B27,C41 |
Chr7:377124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,C13,C38,C9 |
Chr7:377324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,D7 |
Chr7:377430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,D10 |
Chr7:377607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,C13,C38,C9 |
Chr7:377778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:377794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:377833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr7:378038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771361.1PF25487
ETR1_N 44-142 aa
PF01590
GAF 185-335 aa
PF00512
HisKA 372-434 aa
PF00072
Response_reg 638-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771361.1 |
Pfam | PF25487 |
ETR1_N | Domain | 44 | 142 | 6.2e-42 | 143.0 | Ethylene receptor 1-like, N-terminal domain |
XP_057771361.1 |
Pfam | PF01590 |
GAF | Domain | 185 | 335 | 4.8e-13 | 50.5 | GAF domain |
XP_057771361.1 |
Pfam | PF00512 |
HisKA | Domain | 372 | 434 | 2.1e-07 | 31.6 | His Kinase A (phospho-acceptor) domain |
XP_057771361.1 |
Pfam | PF00072 |
Response_reg | Domain | 638 | 747 | 1.3e-19 | 71.1 | Response regulator receiver domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。