Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000079

染色体: Chr07 坐标: 375452-379651 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000079
名称SmilChr07G000079
描述ethylene receptor 2-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向375452 - 379651 / -

ID 对照

NCBI Gene IDLOC130991271
GeneID130991271
locus_tag-
NCBI NameLOC130991271
原始查询SmilChr07G000079

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ethylene receptor 2-like
产物ethylene receptor 2-like
ArabidopsisAT3G04580 (EIN4)
Signal transduction histidine kinase, hybrid-type, ethylene sensor [Source:NCBI gene (formerly Entrezgene);Acc:819614]
identity=55.4; qcov=0.982; evalue=0; confidence=high
RiceOs04g0169100 (ETR2)
-
identity=51.8; qcov=0.957; evalue=0; confidence=high
GOGO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0005515 (protein binding); GO:0005783 (endoplasmic reticulum); GO:0005789 (endoplasmic reticulum membrane); GO:0009723 (response to ethylene); GO:0038199 (ethylene receptor activity); GO:0051740 (ethylene binding)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
PfamPF00072 (Response_reg); PF00512 (HisKA); PF01590 (GAF); PF25487 (ETR1_N)
InterPro-
eggNOG-
NRGeneID:130991271

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057771361.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057771361.1
3 Golgi apparatus 高尔基体 0.40000 XP_057771361.1
4 Nucleus 细胞核 0.00000 XP_057771361.1
5 Chromosome 染色体 0.00000 XP_057771361.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:375765 C T EMS_canonical_SNV CDS_variant 4 B106,B47,C71,C83
Chr7:375780 G A EMS_canonical_SNV CDS_variant 1 B33
Chr7:375796 C T EMS_canonical_SNV CDS_variant 3 B121,B126,B14
Chr7:375797 G A EMS_canonical_SNV CDS_variant 4 A10,B117,B27,C41
Chr7:377124 C T EMS_canonical_SNV CDS_variant 4 B109,C13,C38,C9
Chr7:377324 C T EMS_canonical_SNV CDS_variant 2 B33,D7
Chr7:377430 C T EMS_canonical_SNV CDS_variant 2 B73,D10
Chr7:377607 C T EMS_canonical_SNV CDS_variant 4 B109,C13,C38,C9
Chr7:377778 G A EMS_canonical_SNV CDS_variant 1 B93
Chr7:377794 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:377833 C T EMS_canonical_SNV CDS_variant 1 B38
Chr7:378038 G A EMS_canonical_SNV CDS_variant 1 C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057771361.1
763 aa
N
1
382
763
ETR1_N
GAF
HisKA
Response_reg
C
PF25487 ETR1_N 44-142 aa PF01590 GAF 185-335 aa PF00512 HisKA 372-434 aa PF00072 Response_reg 638-747 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771361.1 Pfam PF25487 ETR1_N Domain 44 142 6.2e-42 143.0 Ethylene receptor 1-like, N-terminal domain
XP_057771361.1 Pfam PF01590 GAF Domain 185 335 4.8e-13 50.5 GAF domain
XP_057771361.1 Pfam PF00512 HisKA Domain 372 434 2.1e-07 31.6 His Kinase A (phospho-acceptor) domain
XP_057771361.1 Pfam PF00072 Response_reg Domain 638 747 1.3e-19 71.1 Response regulator receiver domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057915378.1
CTGAGGATTGAAAAAGGTATCGTCTAAGTTCTCTTAATGTGAACCCCCGTGGGCCCCACCTCCCCTCTCTCTAGATTTCCTCTCTCTACACAAGTGCATACATACGAATTATTCTCTCTTTCTTTCTCCTCGTCCCACTTCATTTCTCCACCTGTTTTCTCTCCAGCCGCTGCTGGGAACGCCTCCGCGTTTTGCACAACACTCCCATCTCTCTCTCTCTCACTAGAAATTGTGTTTCGAAATTTCCAAATACGCAGAGA...

CDS

1 records

下载 CDS FASTA
LOC130991271
ATGTTCAAGACATTAGCATCTGCATTGCTGTTGTTGCTGTTGTTGTTGTTGTCGTTGTCTGTTTGCATCACAGCTGCAGACAGTGAGTTCCGCTGCAGCTGTGATGAGGAGGGGTTTTGGAGCATTGAGAATATCTTGGAGTGCCAAAAAGTGAGTGATTTCTTGATTGCAGTGGCTTACTTCTCCATCCCGATTGAGCTCCTTTACTTCGTTAGCTGCTCCAACATTCCGTTCAAATGGGTGCTGATTCAGTTCATCGC...

Protein

1 records

下载 Protein FASTA
XP_057771361.1
MFKTLASALLLLLLLLLSLSVCITAADSEFRCSCDEEGFWSIENILECQKVSDFLIAVAYFSIPIELLYFVSCSNIPFKWVLIQFIAFIVLCGMTHLLNGWTYGPHTFQLMLALTIFKCLTALVSFATAITLFTLIPLLLKVKVREIMLKKKTWDLDREVGIIKKQKEAGLHVRMLTHEIRKYLDRHTILYTTLVELSKTLDLKNCVVWMPNSGRTEITLTHELREHSFPNAYNTVIPTSEPDVRKIKGSDRAKILDPES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器