当前解析结果
SmilChr07G000081| 统一新 Gene ID | SmilChr07G000081 |
|---|---|
| 名称 | SmilChr07G000081 |
| 描述 | cellulose synthase-like protein G2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 394187 - 400773 / - |
| NCBI Gene ID | LOC130991273 |
|---|---|
| GeneID | 130991273 |
| locus_tag | - |
| NCBI Name | LOC130991273 |
| 原始查询 | SmilChr07G000081 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cellulose synthase-like protein G2 |
| 产物 | cellulose synthase-like protein G2 |
| Arabidopsis | AT4G24000 (CSLG2)cellulose synthase like G2 [Source:NCBI gene (formerly Entrezgene);Acc:828500] identity=32.9; qcov=1.04; evalue=1.47e-132; confidence=low |
| Rice | Os09g0478100 (OsCslE1)- identity=31; qcov=1.06; evalue=9.52e-120; confidence=low |
| GO | GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF03552 (Cellulose_synt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991273 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057771362.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057771362.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057771363.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057771363.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057771362.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:394460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C12 |
Chr7:394583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C54 |
Chr7:394638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,D4 |
Chr7:394742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr7:394855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:394863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,C21,C76 |
Chr7:395568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:395688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr7:395776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B7,B79 |
Chr7:395811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:395882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B12,B140,B82,D4 |
Chr7:396228 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771362.1PF03552
Cellulose_synt 100-377 aa
PF03552
Cellulose_synt 378-726 aa
XP_057771363.1PF03552
Cellulose_synt 100-216 aa
PF03552
Cellulose_synt 230-332 aa
PF03552
Cellulose_synt 334-682 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771362.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 100 | 377 | 9.7e-127 | 425.1 | Cellulose synthase |
XP_057771362.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 378 | 726 | 9.7e-127 | 425.1 | Cellulose synthase |
XP_057771363.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 100 | 216 | 7.5e-109 | 366.0 | Cellulose synthase |
XP_057771363.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 230 | 332 | 7.5e-109 | 366.0 | Cellulose synthase |
XP_057771363.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 334 | 682 | 7.5e-109 | 366.0 | Cellulose synthase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。