当前解析结果
SmilChr07G000084| 统一新 Gene ID | SmilChr07G000084 |
|---|---|
| 名称 | SmilChr07G000084 |
| 描述 | cellulose synthase-like protein G2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 430129 - 438634 / - |
| NCBI Gene ID | LOC130991280 |
|---|---|
| GeneID | 130991280 |
| locus_tag | - |
| NCBI Name | LOC130991280 |
| 原始查询 | SmilChr07G000084 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cellulose synthase-like protein G2 |
| 产物 | cellulose synthase-like protein G2 |
| Arabidopsis | AT4G24000 (CSLG2)cellulose synthase like G2 [Source:NCBI gene (formerly Entrezgene);Acc:828500] identity=36.1; qcov=0.997; evalue=7.5e-159; confidence=medium |
| Rice | Os02g0725300 (OsCslE2)- identity=35.1; qcov=0.963; evalue=2.73e-139; confidence=medium |
| GO | GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF03552 (Cellulose_synt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991280 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057771368.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057771368.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057771368.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771368.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771368.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:430304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr7:430323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B88 |
Chr7:430590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B10,C59,C72,C80 |
Chr7:430596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:430676 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B136 |
Chr7:430676 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B136 |
Chr7:431918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B119,C27 |
Chr7:434776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,B72 |
Chr7:437650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C46 |
Chr7:437662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B28,B72 |
Chr7:437827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B86,C35 |
Chr7:437835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771368.1PF03552
Cellulose_synt 98-369 aa
PF03552
Cellulose_synt 370-715 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771368.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 98 | 369 | 8.9e-125 | 418.6 | Cellulose synthase |
XP_057771368.1 |
Pfam | PF03552 |
Cellulose_synt | Domain | 370 | 715 | 8.9e-125 | 418.6 | Cellulose synthase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。