当前解析结果
SmilChr07G000088| 统一新 Gene ID | SmilChr07G000088 |
|---|---|
| 名称 | SmilChr07G000088 |
| 描述 | TNF receptor-associated factor homolog 1a-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 461266 - 470228 / + |
| NCBI Gene ID | LOC130991284 |
|---|---|
| GeneID | 130991284 |
| locus_tag | - |
| NCBI Name | LOC130991284 |
| 原始查询 | SmilChr07G000088 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TNF receptor-associated factor homolog 1a-like |
| 产物 | TNF receptor-associated factor homolog 1a-like |
| Arabidopsis | AT1G04300 (AT1G04300)TRAF-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839551] identity=47.7; qcov=1.03; evalue=0; confidence=high |
| Rice | Os01g0775300 (OsM1)- identity=63.8; qcov=0.446; evalue=0; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00917 (MATH); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991284 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057771378.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057771378.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057771378.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771378.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771378.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:462189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:462295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B59,B82,C39,C9 |
Chr7:464140 |
TA |
T |
1bp_deletion | frameshift_variant | 6 | A9,B24,B25,B80,C36,C57 |
Chr7:464519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,B81,C71 |
Chr7:465281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B32,B65,B97,C47 |
Chr7:465282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr7:465402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr7:466771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B46,D8 |
Chr7:467345 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | A16,B136 |
Chr7:467345 |
G |
GA |
1bp_insertion | CDS_variant | 2 | A16,B136 |
Chr7:467697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:467734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771378.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
XP_057771379.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
XP_057771380.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
XP_057771382.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
XP_057771383.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
XP_057771384.1PF22486
MATH_2 73-193 aa
PF00917
MATH 78-195 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771378.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771378.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
XP_057771379.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771379.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
XP_057771380.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771380.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
XP_057771382.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771382.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
XP_057771383.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771383.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
XP_057771384.1 |
Pfam | PF22486 |
MATH_2 | Domain | 73 | 193 | 3.4e-33 | 115.5 | MATH domain |
XP_057771384.1 |
Pfam | PF00917 |
MATH | Domain | 78 | 195 | 2.5e-21 | 76.8 | MATH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。