Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000096`

染色体: Chr07 坐标: 517020-526084 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000096`
名称	SmilChr07G000096
描述	F-box/LRR-repeat protein 4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	517020 - 526084 / `-`

ID 对照

NCBI Gene ID	`LOC130991291`
GeneID	`130991291`
locus_tag	`-`
NCBI Name	`LOC130991291`
原始查询	`SmilChr07G000096`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein 4-like
产物	F-box/LRR-repeat protein 4-like
Arabidopsis	`AT5G40470` (AT5G40470) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834045] identity=41.7; qcov=1.05; evalue=3.86e-94; confidence=medium
Rice	`Os12g0108500` (OsFbox636) - identity=25.3; qcov=0.611; evalue=1.41e-10; confidence=low
GO	GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6)
InterPro	-
eggNOG	-
NR	GeneID:130991291

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771396.1`
2	Chromosome	染色体	0.00000	`XP_057771396.1`
3	Centromere	着丝粒	0.00000	`XP_057771396.1`
4	Chromatin	染色质	0.00000	`XP_057771396.1`
5	Telomere	端粒	0.00000	`XP_057771396.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:517119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B16,C64,C66
`Chr7:517236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:517269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:517282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr7:517479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B51,B59,C20
`Chr7:517504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A25,B97
`Chr7:517569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B51,B59,C20
`Chr7:517583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B51,B59,C20
`Chr7:517586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B25,C8
`Chr7:517592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B4,B61,C70,D9
`Chr7:517596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B134,B4,B61,C70,D9
`Chr7:517646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C13,C26,C40,C5,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771396.1

473 aa

236

473

F-box

F-box-like

LRR_6

PF00646 F-box 4-38 aa PF12937 F-box-like 7-38 aa PF13516 LRR_6 301-322 aa PF13516 LRR_6 356-375 aa PF13516 LRR_6 412-428 aa

XP_057771397.1

473 aa

236

473

F-box

F-box-like

LRR_6

PF00646 F-box 4-38 aa PF12937 F-box-like 7-38 aa PF13516 LRR_6 301-322 aa PF13516 LRR_6 356-375 aa PF13516 LRR_6 412-428 aa

XP_057771398.1

473 aa

236

473

F-box

F-box-like

LRR_6

PF00646 F-box 4-38 aa PF12937 F-box-like 7-38 aa PF13516 LRR_6 301-322 aa PF13516 LRR_6 356-375 aa PF13516 LRR_6 412-428 aa

XP_057771400.1

473 aa

236

473

F-box

F-box-like

LRR_6

PF00646 F-box 4-38 aa PF12937 F-box-like 7-38 aa PF13516 LRR_6 301-322 aa PF13516 LRR_6 356-375 aa PF13516 LRR_6 412-428 aa

XP_057771401.1

473 aa

236

473

F-box

F-box-like

LRR_6

PF00646 F-box 4-38 aa PF12937 F-box-like 7-38 aa PF13516 LRR_6 301-322 aa PF13516 LRR_6 356-375 aa PF13516 LRR_6 412-428 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771396.1`	Pfam	`PF00646`	F-box	Domain	4	38	1.1e-09	38.5	F-box domain
`XP_057771396.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	5.4e-07	30.0	F-box-like
`XP_057771396.1`	Pfam	`PF13516`	LRR_6	Repeat	301	322	2.6e-10	40.2	Leucine Rich repeat
`XP_057771396.1`	Pfam	`PF13516`	LRR_6	Repeat	356	375	2.6e-10	40.2	Leucine Rich repeat
`XP_057771396.1`	Pfam	`PF13516`	LRR_6	Repeat	412	428	2.6e-10	40.2	Leucine Rich repeat
`XP_057771397.1`	Pfam	`PF00646`	F-box	Domain	4	38	1.1e-09	38.5	F-box domain
`XP_057771397.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	5.4e-07	30.0	F-box-like
`XP_057771397.1`	Pfam	`PF13516`	LRR_6	Repeat	301	322	2.6e-10	40.2	Leucine Rich repeat
`XP_057771397.1`	Pfam	`PF13516`	LRR_6	Repeat	356	375	2.6e-10	40.2	Leucine Rich repeat
`XP_057771397.1`	Pfam	`PF13516`	LRR_6	Repeat	412	428	2.6e-10	40.2	Leucine Rich repeat
`XP_057771398.1`	Pfam	`PF00646`	F-box	Domain	4	38	1.1e-09	38.5	F-box domain
`XP_057771398.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	5.4e-07	30.0	F-box-like
`XP_057771398.1`	Pfam	`PF13516`	LRR_6	Repeat	301	322	2.6e-10	40.2	Leucine Rich repeat
`XP_057771398.1`	Pfam	`PF13516`	LRR_6	Repeat	356	375	2.6e-10	40.2	Leucine Rich repeat
`XP_057771398.1`	Pfam	`PF13516`	LRR_6	Repeat	412	428	2.6e-10	40.2	Leucine Rich repeat
`XP_057771400.1`	Pfam	`PF00646`	F-box	Domain	4	38	1.1e-09	38.5	F-box domain
`XP_057771400.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	5.4e-07	30.0	F-box-like
`XP_057771400.1`	Pfam	`PF13516`	LRR_6	Repeat	301	322	2.6e-10	40.2	Leucine Rich repeat
`XP_057771400.1`	Pfam	`PF13516`	LRR_6	Repeat	356	375	2.6e-10	40.2	Leucine Rich repeat
`XP_057771400.1`	Pfam	`PF13516`	LRR_6	Repeat	412	428	2.6e-10	40.2	Leucine Rich repeat
`XP_057771401.1`	Pfam	`PF00646`	F-box	Domain	4	38	1.1e-09	38.5	F-box domain
`XP_057771401.1`	Pfam	`PF12937`	F-box-like	Domain	7	38	5.4e-07	30.0	F-box-like
`XP_057771401.1`	Pfam	`PF13516`	LRR_6	Repeat	301	322	2.6e-10	40.2	Leucine Rich repeat
`XP_057771401.1`	Pfam	`PF13516`	LRR_6	Repeat	356	375	2.6e-10	40.2	Leucine Rich repeat
`XP_057771401.1`	Pfam	`PF13516`	LRR_6	Repeat	412	428	2.6e-10	40.2	Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057915414.1
GAATTACATAATTTCAAAGTACTAAAATTACAATATACTATAAAATAAATATAAATAATATTTCAAACATAAATTATAAATATATTTTTATTTTGTTTCAAATTAGTGGTTAAAATTATGAGCTAAATCGAGTGTCATCACACACACTGTATCAGAGGTTGGCAAAAGCTCAACGCCGAGCGGCGATGGCGGAAGTTTTATCCGTCGTTGGATCGAAGCCGCGACCTATTAATACGATTACTATCACGCCGGCCTTCTTC...

XM_057915415.1
GAATTACATAATTTCAAAGTACTAAAATTACAATATACTATAAAATAAATATAAATAATATTTCAAACATAAATTATAAATATATTTTTATTTTGTTTCAAATTAGTGGTTAAAATTATGAGCTAAATCGAGTGTCATCACACACACTGTATCAGAGGTTGGCAAAAGCTCAACGCCGAGCGGCGATGGCGGAAGTTTTATCCGTCGTTGGATCGAAGCCGCGACCTATTAATACGATTACTATCACGCCGGCCTTCTTC...

CDS

5 records

下载 CDS FASTA

LOC130991291
ATGGACACGCATCTCTGCGATGAGCTCCTCGAAGAAATCTTCCGCCGCCTCCCTCCGCCGTCCTCCGCCGCGGTCTCCCTCGTCTCCAAGCGGTGGCGCCGCCTCCTCCACTCCTCCACCACCTCCCTCTCCCTCAATTTCCCCCCTCCCTACAACCCCACCACCATCACATCCTTATCCACTTTCCTCTCCCACCATCCTTATCTCTCCTCAATCTCTCTCTCCGGCGGCGGCGACCCGCTCCTCCTCGCCGTGGCCGA...

Protein

5 records

下载 Protein FASTA

XP_057771396.1
MDTHLCDELLEEIFRRLPPPSSAAVSLVSKRWRRLLHSSTTSLSLNFPPPYNPTTITSLSTFLSHHPYLSSISLSGGGDPLLLAVADSCPNLRQLRHPSDPVSPFALYTLSASCVHLSSISVSLSRPLSFHWLPSFGSLKSLSLSFTGTSTEADNLEIEENRDAFDLELDLESLSLRGILAGDSGLSCLWRNCKNVKKLQLKSCESVGDSASFSNFLKFLNGIQELELRTCRSIVDSVLLKLAADCISLQSLLVYDGGSK...

XP_057771397.1
MDTHLCDELLEEIFRRLPPPSSAAVSLVSKRWRRLLHSSTTSLSLNFPPPYNPTTITSLSTFLSHHPYLSSISLSGGGDPLLLAVADSCPNLRQLRHPSDPVSPFALYTLSASCVHLSSISVSLSRPLSFHWLPSFGSLKSLSLSFTGTSTEADNLEIEENRDAFDLELDLESLSLRGILAGDSGLSCLWRNCKNVKKLQLKSCESVGDSASFSNFLKFLNGIQELELRTCRSIVDSVLLKLAADCISLQSLLVYDGGSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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