当前解析结果
SmilChr07G000119| 统一新 Gene ID | SmilChr07G000119 |
|---|---|
| 名称 | SmilChr07G000119 |
| 描述 | GDP-mannose 3,5-epimerase 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 675796 - 678955 / - |
| NCBI Gene ID | LOC130991312 |
|---|---|
| GeneID | 130991312 |
| locus_tag | - |
| NCBI Name | LOC130991312 |
| 原始查询 | SmilChr07G000119 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDP-mannose 3,5-epimerase 2 |
| 产物 | GDP-mannose 3%2C5-epimerase 2 |
| Arabidopsis | AT5G28840 (GME)GDP-D-mannose 3',5'-epimerase [Source:NCBI gene (formerly Entrezgene);Acc:833002] identity=92; qcov=1; evalue=0; confidence=high |
| Rice | Os11g0591100 (OsGME2)- identity=93.7; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0047918 (GDP-mannose 3,5-epimerase activity); GO:0051287 (NAD binding) |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991312 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057771426.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057771426.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771426.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771426.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:676041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B33,C6 |
Chr7:676050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:676404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr7:676452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,D8 |
Chr7:676454 |
C |
CAA |
2bp_insertion | frameshift_variant | 6 | B35,B5,B54,B57,C52,C55 |
Chr7:676455 |
CCG |
C |
2bp_deletion | frameshift_variant | 6 | B35,B5,B54,B57,C52,C55 |
Chr7:676762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,A3,B130 |
Chr7:676898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B22,B29,B48,C48 |
Chr7:677576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C53 |
Chr7:677660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,C22,C40 |
Chr7:677672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C40 |
Chr7:677705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771426.1PF01370
Epimerase 30-269 aa
PF01073
3Beta_HSD 32-189 aa
PF16363
GDP_Man_Dehyd 32-330 aa
PF07993
NAD_binding_4 87-205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771426.1 |
Pfam | PF01370 |
Epimerase | Family | 30 | 269 | 4.8e-46 | 157.8 | NAD dependent epimerase/dehydratase family |
XP_057771426.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 32 | 189 | 3.8e-10 | 40.0 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057771426.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 32 | 330 | 1.4e-27 | 97.8 | GDP-mannose 4,6 dehydratase |
XP_057771426.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 87 | 205 | 1.6e-06 | 28.2 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。