Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000123`

染色体: Chr07 坐标: 704005-706875 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000123`
名称	SmilChr07G000123
描述	3-ketoacyl-CoA synthase 20-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	704005 - 706875 / `-`

ID 对照

NCBI Gene ID	`LOC130991316`
GeneID	`130991316`
locus_tag	`-`
NCBI Name	`LOC130991316`
原始查询	`SmilChr07G000123`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-ketoacyl-CoA synthase 20-like
产物	3-ketoacyl-CoA synthase 20-like
Arabidopsis	`AT2G26640` (KCS11) 3-ketoacyl-CoA synthase 11 [Source:NCBI gene (formerly Entrezgene);Acc:817205] identity=75.9; qcov=0.954; evalue=0; confidence=high
Rice	`Os06g0598800` (WSL1) - identity=78.2; qcov=0.958; evalue=0; confidence=high
GO	GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C)
InterPro	-
eggNOG	-
NR	GeneID:130991316

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057771433.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057771433.1`
3	Nucleus	细胞核	0.00000	`XP_057771433.1`
4	Chromosome	染色体	0.00000	`XP_057771433.1`
5	Centromere	着丝粒	0.00000	`XP_057771433.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:704422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr7:704440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C69,C85
`Chr7:704554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:704894`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B75
`Chr7:704894`	`TG`	`T`	1bp_deletion	CDS_variant	1	B75
`Chr7:704925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr7:704950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,C16,D11
`Chr7:704983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B85,B86
`Chr7:705040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr7:705041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B62,C61,C75,D9
`Chr7:705828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C23,D10
`Chr7:705885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B99,C4,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771433.1

518 aa

259

518

FAE1_CUT1_RppA

ACP_syn_III_C

Chal_sti_synt_C

PF08392 FAE1_CUT1_RppA 100-389 aa PF08541 ACP_syn_III_C 406-486 aa PF02797 Chal_sti_synt_C 408-486 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771433.1`	Pfam	`PF08392`	FAE1_CUT1_RppA	Family	100	389	1.5e-143	478.2	FAE1/Type III polyketide synthase-like protein
`XP_057771433.1`	Pfam	`PF08541`	ACP_syn_III_C	Domain	406	486	5.9e-10	39.9	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
`XP_057771433.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	408	486	1.2e-08	35.9	Chalcone and stilbene synthases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915450.1
TAGGATTACTTCCACAAATAATGAAATTCCAGTTGGAAGGTGATGGTTAGTAGTTAGATTGAGCAATTAATGTTTGGTATAACTAGAAATCGTGAATTTTCAAAACTCCAATATTTATTTATTTAAATTAGATAAAGGCTCCATTTATTTCGACAGCCATTTCCATTGATAATAGTAGTTGGCCAAATTAGCCATTAAATTTTCCTATGTCAGAAGTCAAAGAAACTCTTTAAATACACTCATATATCATCACTTCCCAA...

CDS

1 records

下载 CDS FASTA

LOC130991316
ATGGGGAATGGCGAGGCGGAGGCGGCGGGGAGGATCTCGGTGGACGCGGAGGCGGCTGGAGGGAGAAACAACCTCCCAAACTTCCTCCAATCGGTGAAGCTGAAATACGTGAAGCTCGGCTACCACTACACGATCTCGCACGCGATGTACCTCCTCCTCCTCCCGATCCTCGCGATCGCCGCCGTCAACCTCTCCGCCGTGACCGCCGCGGACCTGATCCTCCTCTACGAGCAGCTGCGCTTCAACCTCGTCGCCGTCGT...

Protein

1 records

下载 Protein FASTA

XP_057771433.1
MGNGEAEAAGRISVDAEAAGGRNNLPNFLQSVKLKYVKLGYHYTISHAMYLLLLPILAIAAVNLSAVTAADLILLYEQLRFNLVAVVACSTLMVFLGTLYFMTRPRRVYLVDFACYKPDAKVMCSKEIFMERSRQAESFTEENLGFQKKILERSGLGQKTYFPEALMRVPAEPSMAEARKEAEMVMFGAIDELLAKTGVKAKDIGILVVNCSLFNPTPSLSAMVVNRYKLRGNVLSYNLGGMGCSAGLISIDLAKQLLQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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