当前解析结果
SmilChr07G000134| 统一新 Gene ID | SmilChr07G000134 |
|---|---|
| 名称 | SmilChr07G000134 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 802985 - 804980 / - |
| NCBI Gene ID | LOC130993005 |
|---|---|
| GeneID | 130993005 |
| locus_tag | - |
| NCBI Name | LOC130993005 |
| 原始查询 | SmilChr07G000134 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT3G26922 (AT3G26922)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922367] identity=29.7; qcov=0.554; evalue=1.23e-19; confidence=low |
| Rice | Os01g0789000 (OsFbox044)- identity=30.5; qcov=0.583; evalue=4.62e-16; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993005 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773709.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773709.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773709.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773709.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773709.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:802996 |
CAA |
* |
2bp_deletion | CDS_variant | 3 | B27,B44,D4 |
Chr7:803018 |
AC |
* |
1bp_deletion | CDS_variant | 4 | B111,B6,C22,C26 |
Chr7:803041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B45,B6,C45 |
Chr7:803043 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | A16,B23,B63 |
Chr7:803043 |
AG |
A |
1bp_deletion | CDS_variant | 3 | A16,B23,B63 |
Chr7:803045 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | A16,B63 |
Chr7:803045 |
AG |
A |
1bp_deletion | CDS_variant | 2 | A16,B63 |
Chr7:803047 |
TC |
T |
1bp_deletion | CDS_variant | 2 | A16,B63 |
Chr7:803447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B130 |
Chr7:803450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B123 |
Chr7:803474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C51 |
Chr7:803482 |
GGA |
G |
2bp_deletion | frameshift_variant | 4 | A13,A15,B123,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773709.1PF00646
F-box 25-61 aa
PF23622
LRR_At1g61320_AtMIF1 92-418 aa
PF24758
LRR_At5g56370 113-245 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773709.1 |
Pfam | PF00646 |
F-box | Domain | 25 | 61 | 1.8e-07 | 31.5 | F-box domain |
XP_057773709.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 92 | 418 | 3.6e-08 | 33.9 | At1g61320/AtMIF1, LRR domain |
XP_057773709.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 113 | 245 | 9.6e-11 | 42.5 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。