Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000145`

染色体: Chr07 坐标: 872390-878801 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000145`
名称	SmilChr07G000145
描述	F-box/LRR-repeat protein At5g02910-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	872390 - 878801 / `-`

ID 对照

NCBI Gene ID	`LOC130991346`
GeneID	`130991346`
locus_tag	`-`
NCBI Name	`LOC130991346`
原始查询	`SmilChr07G000145`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At5g02910-like
产物	F-box/LRR-repeat protein At5g02910-like
Arabidopsis	`AT5G02910` (AT5G02910) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831746] identity=27.8; qcov=0.996; evalue=3.81e-21; confidence=low
Rice	`Os08g0199000` (OsFbox426) - identity=27.9; qcov=0.597; evalue=1.15e-11; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130991346

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771489.1`
2	Chromosome	染色体	0.00000	`XP_057771489.1`
3	Centromere	着丝粒	0.00000	`XP_057771489.1`
4	Chromatin	染色质	0.00000	`XP_057771489.1`
5	Telomere	端粒	0.00000	`XP_057771489.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:872626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:872899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,C17,C23
`Chr7:873428`	`G`	`A`	EMS_canonical_SNV	stop_gained	38	A18,A19,A23,A25,B1,B107,B122,B126,B128,B131,B14,B2,B53,B58,B6,B66,B7,B75,B90,B92,C14,C18,C19,C21,C22,C3,C31,C38,C41,C46,C56,C6,C69,C76,C8,C80,C84,C86
`Chr7:873505`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr7:873531`	`A`	`AT`	1bp_insertion	frameshift_variant	6	B126,B58,B90,C8,C84,C86
`Chr7:873545`	`GA`	`G`	1bp_deletion	frameshift_variant	182	A1,A11,A14,A15,A16,A18,A19,A21,A22,A23,A25,A3,A4,A6,A7,A9,B1,B10,B100,B101,B102,B105,B108,B109,B11,B110,B112,B113,B117,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B139,B140,B15,B17,B18,B19,B20,B22,B23,B24,B27,B29,B30,B32,B33,B34,B35,B36,B38,B39,B4,B41,B42,B43,B44,B46,B48,B49,B5,B50,B51,B53,B55,B56,B59,B60,B61,B66,B67,B7,B70,B71,B72,B73,B74,B76,B77,B8,B80,B82,B83,B84,B85,B86,B87,B88,B89,B90,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C2,C21,C23,C24,C26,C28,C29,C3,C30,C32,C33,C34,C36,C37,C38,C39,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C59,C61,C62,C63,C64,C65,C66,C68,C69,C72,C73,C74,C76,C78,C79,C8,C81,C85,C86,C87,D10,D11,D2,D4,D5,D6,D7,D8
`Chr7:873549`	`T`	`TC`	1bp_insertion	frameshift_variant	182	A1,A11,A14,A15,A16,A18,A19,A21,A22,A23,A25,A3,A4,A6,A7,A9,B1,B10,B100,B101,B102,B105,B108,B109,B11,B110,B112,B113,B117,B12,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B133,B134,B135,B136,B137,B139,B140,B15,B17,B18,B19,B20,B22,B23,B24,B27,B29,B30,B32,B33,B34,B35,B36,B38,B39,B4,B41,B42,B43,B44,B46,B48,B49,B5,B50,B51,B53,B55,B56,B59,B60,B61,B66,B67,B7,B70,B71,B72,B73,B74,B76,B77,B8,B80,B82,B83,B84,B85,B86,B87,B88,B89,B90,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C2,C21,C23,C24,C26,C28,C29,C3,C30,C32,C33,C34,C36,C37,C38,C39,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C59,C61,C62,C63,C64,C65,C66,C68,C69,C72,C73,C74,C76,C78,C79,C8,C81,C85,C86,C87,D10,D11,D2,D4,D5,D6,D7,D8
`Chr7:873569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B81,C13
`Chr7:873590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:873688`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B48,B8
`Chr7:873688`	`A`	`AT`	1bp_insertion	CDS_variant	2	B48,B8
`Chr7:873867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771489.1

469 aa

234

469

F-box

LRR_At5g56370

PF00646 F-box 4-43 aa PF24758 LRR_At5g56370 94-216 aa

XP_057771490.1

469 aa

234

469

F-box

LRR_At5g56370

PF00646 F-box 4-43 aa PF24758 LRR_At5g56370 94-216 aa

XP_057771491.1

469 aa

234

469

F-box

LRR_At5g56370

PF00646 F-box 4-43 aa PF24758 LRR_At5g56370 94-216 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771489.1`	Pfam	`PF00646`	F-box	Domain	4	43	4.7e-05	23.8	F-box domain
`XP_057771489.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	94	216	9.5e-11	42.5	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057771490.1`	Pfam	`PF00646`	F-box	Domain	4	43	4.7e-05	23.8	F-box domain
`XP_057771490.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	94	216	9.5e-11	42.5	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057771491.1`	Pfam	`PF00646`	F-box	Domain	4	43	4.7e-05	23.8	F-box domain
`XP_057771491.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	94	216	9.5e-11	42.5	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915507.1
TGACTAATTTAGATATACATACAAACTGAGGAAACCCTAGAAAACTCTCATCGCCCCCACTCCACACCATTCAATTCATCTTCTCTAATTTTCGCCGCCATTGACAAACCCGCCACTCCATCAGCTGAAAGAAAACCACATCTGTTCGTCAACTAATTTTTTCAGATTCGCTCACTCCGCCGCCGCCTCTGTGGCTCCCTCCGCCCCTTACGCGTCGGCGTCTCGACTTCCTCGTTGAACAAGCTCTTTCTCTAGCTCAG...

XM_057915506.1
AACCCTCAAAATTGTTGTATCTTCAATTTTGAACCCGCCGCCACTCATCTTCAGCCTCTCTCTCACAACCGCACCACACCACCCCAACCTCACACCGGCCGAAATTAATCCCCCAATATCCAATTCATCTTCTCTACTTTTCGCCGCCATTGTCAACCCGCCACCCCATCGGCTGAAAGAAAAGCACATCATTTCATCAATTGATTTTTTCAGATTCACCGACTCCGCCGCCGCTTCTAGTCGCAGCCTCCATGGGTTGA...

CDS

3 records

下载 CDS FASTA

LOC130991346
ATGGATCGACTCAGTGAGTTGCCGGATTATGCAATATTTCACATTTTTTGGTCGTTGCCTATTATTGATGTTGTTAGGACAACAATTCTATCCAAGCGCTGGGAAAACCTTTGGACCACCACTCCCTTCCTTAATATAACTGATAATCATATTTCTGATTCTGATACTGGAAAAAAGTTTGCAAACATTGTTCATCGGGCTTTATTACGCTGGGATGGGGTAAAGGTTCTGAAATTCAAGGTTAACTTGCACCGTGAGCT...

Protein

3 records

下载 Protein FASTA

XP_057771489.1
MDRLSELPDYAIFHIFWSLPIIDVVRTTILSKRWENLWTTTPFLNITDNHISDSDTGKKFANIVHRALLRWDGVKVLKFKVNLHRELSIYVDADLWVRFAKKHEVEELYLPWRDLNMKRIGNNDHKVCWVPQYLYSCSSLKVLSINTFHFSIRGNVQWNQLKSLTIVNGFGVTEDVMNQVLFGSPQLEVLVLSFVESGESLCIRSSSLKELSINKYLCNADTYTERELKIWTSKIKSLEIWTPNLKTLEIKGIPYSKCLL...

XP_057771490.1
MDRLSELPDYAIFHIFWSLPIIDVVRTTILSKRWENLWTTTPFLNITDNHISDSDTGKKFANIVHRALLRWDGVKVLKFKVNLHRELSIYVDADLWVRFAKKHEVEELYLPWRDLNMKRIGNNDHKVCWVPQYLYSCSSLKVLSINTFHFSIRGNVQWNQLKSLTIVNGFGVTEDVMNQVLFGSPQLEVLVLSFVESGESLCIRSSSLKELSINKYLCNADTYTERELKIWTSKIKSLEIWTPNLKTLEIKGIPYSKCLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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