当前解析结果
SmilChr07G000148| 统一新 Gene ID | SmilChr07G000148 |
|---|---|
| 名称 | SmilChr07G000148 |
| 描述 | F-box protein At5g03100-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 883897 - 886444 / - |
| NCBI Gene ID | LOC130991344 |
|---|---|
| GeneID | 130991344 |
| locus_tag | - |
| NCBI Name | LOC130991344 |
| 原始查询 | SmilChr07G000148 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At5g03100-like |
| 产物 | F-box protein At5g03100-like |
| Arabidopsis | AT5G03100 (AT5G03100)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831808] identity=28.3; qcov=0.653; evalue=4.76e-18; confidence=low |
| Rice | Os08g0197500 (OsFbox425)- identity=36.3; qcov=0.24; evalue=2.27e-14; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991344 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771485.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057771485.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057771485.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057771485.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057771485.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:884174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:884240 |
T |
TAG |
2bp_insertion | frameshift_variant | 144 | A13,A14,A15,A19,A20,A21,A22,A25,A3,A4,A5,A8,B1,B10,B101,B102,B103,B105,B106,B110,B111,B113,B114,B115,B117,B119,B120,B122,B123,B124,B125,B126,B127,B129,B130,B134,B135,B137,B14,B140,B15,B18,B2,B20,B22,B26,B28,B3,B31,B33,B36,B40,B42,B43,B44,B49,B50,B52,B53,B54,B55,B59,B63,B64,B65,B68,B7,B70,B71,B73,B74,B75,B77,B78,B8,B80,B81,B83,B84,B85,B88,B89,B9,B94,B95,B97,B98,B99,C11,C12,C14,C16,C18,C19,C21,C23,C24,C25,C26,C27,C28,C29,C30,C31,C32,C34,C35,C36,C37,C38,C4,C40,C43,C46,C48,C5,C52,C53,C54,C56,C59,C6,C60,C64,C66,C68,C69,C7,C70,C71,C72,C75,C76,C77,C79,C81,C84,C86,C87,C9,D4,D6,D7,D9 |
Chr7:884250 |
T |
TG |
1bp_insertion | frameshift_variant | 2 | B45,C55 |
Chr7:884250 |
T |
TG |
1bp_insertion | CDS_variant | 2 | B45,C55 |
Chr7:884283 |
CT |
C |
1bp_deletion | frameshift_variant | 4 | B106,B3,B64,D9 |
Chr7:884283 |
CT |
C |
1bp_deletion | CDS_variant | 4 | B106,B3,B64,D9 |
Chr7:884285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B38 |
Chr7:884288 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B36,B97 |
Chr7:884288 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B36,B97 |
Chr7:884297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C15 |
Chr7:884352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,C12,D7 |
Chr7:884416 |
CTG |
C |
2bp_deletion | frameshift_variant | 47 | A10,A5,A8,B106,B111,B112,B114,B124,B16,B21,B22,B26,B3,B43,B48,B49,B5,B50,B54,B56,B60,B64,B67,B8,B84,B85,B89,B92,B97,C12,C3,C43,C49,C5,C52,C53,C54,C55,C58,C61,C66,C7,C79,D5,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771485.1PF00646
F-box 4-39 aa
PF24758
LRR_At5g56370 94-220 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771485.1 |
Pfam | PF00646 |
F-box | Domain | 4 | 39 | 2.1e-05 | 24.9 | F-box domain |
XP_057771485.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 94 | 220 | 1.8e-11 | 44.8 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。