当前解析结果
SmilChr07G000157| 统一新 Gene ID | SmilChr07G000157 |
|---|---|
| 名称 | SmilChr07G000157 |
| 描述 | F-box/LRR-repeat protein At3g03360-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 940267 - 942214 / + |
| NCBI Gene ID | LOC130993010 |
|---|---|
| GeneID | 130993010 |
| locus_tag | - |
| NCBI Name | LOC130993010 |
| 原始查询 | SmilChr07G000157 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g03360-like |
| 产物 | F-box/LRR-repeat protein At3g03360-like |
| Arabidopsis | AT1G49610 (AT1G49610)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:841385] identity=29.7; qcov=0.965; evalue=1.76e-25; confidence=low |
| Rice | Os10g0128200 (OsFbox517)- identity=25.6; qcov=0.962; evalue=7.42e-17; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773715.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773715.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773715.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773715.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:940514 |
GA |
G |
1bp_deletion | frameshift_variant | 10 | A6,B109,B132,B37,B47,B55,B62,C22,C54,C65 |
Chr7:940523 |
A |
AGC |
2bp_insertion | frameshift_variant | 14 | A6,B109,B112,B132,B37,B47,B55,B62,B72,C22,C54,C56,C65,C79 |
Chr7:940646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:940679 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B70,C16,C74 |
Chr7:940679 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B70,C16,C74 |
Chr7:940698 |
C |
CTT |
2bp_insertion | frameshift_variant | 45 | A19,A4,A5,B101,B102,B109,B112,B12,B120,B121,B122,B132,B133,B15,B18,B23,B25,B26,B32,B35,B37,B47,B49,B5,B50,B51,B55,B57,B62,B7,B72,B79,B80,C39,C47,C51,C54,C55,C57,C64,C65,C66,C70,D1,D11 |
Chr7:940701 |
CGG |
C |
2bp_deletion | frameshift_variant | 41 | A19,A4,A5,B101,B102,B109,B112,B12,B120,B121,B132,B133,B18,B23,B25,B26,B32,B35,B37,B47,B49,B5,B50,B51,B55,B57,B62,B72,B79,B80,C39,C47,C51,C54,C55,C64,C65,C66,C70,D1,D11 |
Chr7:940733 |
GAA |
G |
2bp_deletion | frameshift_variant | 31 | A19,A4,A5,B101,B102,B109,B12,B120,B121,B132,B18,B23,B26,B32,B35,B37,B49,B5,B50,B62,B79,B80,C39,C47,C51,C54,C55,C65,C70,D1,D11 |
Chr7:940741 |
CT |
C |
1bp_deletion | frameshift_variant | 29 | A19,A5,B101,B102,B109,B12,B120,B121,B132,B138,B18,B23,B26,B32,B35,B49,B5,B50,B62,B79,B80,C39,C47,C51,C54,C55,C65,C70,D11 |
Chr7:940754 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D7 |
Chr7:940754 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D7 |
Chr7:940764 |
C |
CAA |
2bp_insertion | frameshift_variant | 36 | A14,A16,A22,A4,A9,B101,B105,B118,B129,B132,B19,B2,B21,B23,B26,B27,B30,B45,B46,B48,B56,B57,B66,B82,B87,B91,B96,C13,C18,C19,C24,C25,C31,C34,C62,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773715.1PF00646
F-box 13-53 aa
PF23622
LRR_At1g61320_AtMIF1 79-354 aa
PF24758
LRR_At5g56370 104-217 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773715.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 4.6e-07 | 30.2 | F-box domain |
XP_057773715.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 79 | 354 | 5.5e-18 | 66.2 | At1g61320/AtMIF1, LRR domain |
XP_057773715.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 104 | 217 | 2.1e-18 | 67.5 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。