当前解析结果
SmilChr07G000174| 统一新 Gene ID | SmilChr07G000174 |
|---|---|
| 名称 | SmilChr07G000174 |
| 描述 | pentatricopeptide repeat-containing protein At5g43790 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1086376 - 1089239 / - |
| NCBI Gene ID | LOC130991366 |
|---|---|
| GeneID | 130991366 |
| locus_tag | - |
| NCBI Name | LOC130991366 |
| 原始查询 | SmilChr07G000174 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g43790 |
| 产物 | pentatricopeptide repeat-containing protein At5g43790 |
| Arabidopsis | AT5G43790 (AT5G43790)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834401] identity=52.6; qcov=0.793; evalue=1.17e-173; confidence=high |
| Rice | Os11g0131400- identity=45.3; qcov=0.973; evalue=1.36e-171; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991366 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057771520.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057771520.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771520.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771520.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771520.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1086659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,C32,C34,C68,D7 |
Chr7:1086742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,C6,C70,C87 |
Chr7:1086782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:1086796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,C35 |
Chr7:1086850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B110,B98 |
Chr7:1086855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:1086901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:1086904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:1086918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr7:1086922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B124 |
Chr7:1086934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:1087110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771520.1PF01535
PPR 76-100 aa
PF13041
PPR_2 292-339 aa
PF01535
PPR 295-324 aa
PF01535
PPR 329-356 aa
PF20431
E_motif 409-471 aa
PF20430
Eplus_motif 477-499 aa
PF14432
DYW_deaminase 507-599 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771520.1 |
Pfam | PF01535 |
PPR | Repeat | 76 | 100 | 5.9e-27 | 92.7 | PPR repeat |
XP_057771520.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 292 | 339 | 2e-30 | 105.3 | PPR repeat family |
XP_057771520.1 |
Pfam | PF01535 |
PPR | Repeat | 295 | 324 | 5.9e-27 | 92.7 | PPR repeat |
XP_057771520.1 |
Pfam | PF01535 |
PPR | Repeat | 329 | 356 | 5.9e-27 | 92.7 | PPR repeat |
XP_057771520.1 |
Pfam | PF20431 |
E_motif | Repeat | 409 | 471 | 8.6e-21 | 74.7 | E motif |
XP_057771520.1 |
Pfam | PF20430 |
Eplus_motif | Motif | 477 | 499 | 1.1e-05 | 25.8 | E+ motif |
XP_057771520.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 507 | 599 | 7.6e-36 | 122.5 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。