Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000182`

染色体: Chr07 坐标: 1157766-1164923 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000182`
名称	SmilChr07G000182
描述	uncharacterized SmilChr07G000182
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1157766 - 1164923 / `-`

ID 对照

NCBI Gene ID	`LOC130991373`
GeneID	`130991373`
locus_tag	`-`
NCBI Name	`LOC130991373`
原始查询	`SmilChr07G000182`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839441]; symbol=AT1G04210; hit=AT1G04210; species=arabidopsis; confidence=high
产物	Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839441]; symbol=AT1G04210; hit=AT1G04210; species=arabidopsis; confidence=high
Arabidopsis	`AT1G04210` (AT1G04210) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839441] identity=51.2; qcov=1; evalue=0; confidence=high
Rice	`Os03g0744300` - identity=55.2; qcov=0.541; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0018107 (peptidyl-threonine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8); PF14381 (EDR1_CTR1_ARMC3_pept); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130991373

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057771533.1`
2	Cytosol	细胞质基质	0.60000	`XP_057771533.1`
3	Nucleus	细胞核	0.40000	`XP_057771533.1`
4	Chromosome	染色体	0.00000	`XP_057771533.1`
5	Centromere	着丝粒	0.00000	`XP_057771533.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1158216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:1158236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C48
`Chr7:1158344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr7:1158375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:1158979`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C14
`Chr7:1158979`	`GC`	`G`	1bp_deletion	CDS_variant	1	C14
`Chr7:1159009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C26,C37,C39,C74
`Chr7:1159031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B19,B86
`Chr7:1159036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B66,C12,C28,C62
`Chr7:1159212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr7:1159215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B29,B95,C63,C83,D3
`Chr7:1159219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771533.1

1082 aa

541

1082

LRR_14

LRR_8

EDR1_CTR1_ARMC3_pept

PK_Tyr_Ser-Thr

Pkinase

PF23598 LRR_14 150-261 aa PF13855 LRR_8 204-262 aa PF14381 EDR1_CTR1_ARMC3_pept 632-715 aa PF07714 PK_Tyr_Ser-Thr 802-1066 aa PF00069 Pkinase 803-1064 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771533.1`	Pfam	`PF23598`	LRR_14	Repeat	150	261	2.8e-17	63.2	Leucine-rich repeat region
`XP_057771533.1`	Pfam	`PF13855`	LRR_8	Repeat	204	262	2.6e-12	47.0	Leucine rich repeat
`XP_057771533.1`	Pfam	`PF14381`	EDR1_CTR1_ARMC3_pept	Domain	632	715	3.2e-18	67.0	EDR1/CTR1/ARMC3, peptidase-like
`XP_057771533.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	802	1066	4.3e-27	95.8	Protein tyrosine and serine/threonine kinase
`XP_057771533.1`	Pfam	`PF00069`	Pkinase	Domain	803	1064	1.3e-35	123.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915550.1
TCCCCACTTCCCCTAGTCCCCACCGATCACCCTCTCTAGATTCTAGGGTTTCATTCTCTCTCTATCTCTCGCTCGCTCTTTTCTCTCTCTCCTTCCCGCTCCTTCACAAATTCACAAACATTTGTACTCCCCTCATGTACAATTACATTTGTATTCTATTCAGTTATCTCACTCACTCAATCGTCGCCTTTCCCTGTCCAAATTGATTCCTTTTTCAATTAATTTCTGCCGAAGTAGTCCCAGTAAGGTTGACTCTCTGT...

CDS

1 records

下载 CDS FASTA

LOC130991373
ATGCAGATTAAGGAATTGGAGAAACTCGAGGCTTCCAGCGCCAAGAATCAAGAAAATACGGCGATAGTAGGGCAATTGGAGGCGTCGGTGGAAAATTGTGGCGCAAAAGCTTCGAATTTCAACTCCGTCATTGATGTATCTGGAAAAGTACTCGATTTTCCGCTTGTTAGTGGCGACGAGAGCACAGTCGAGGAGGTTTACATGTACAAGAATGAGTTGAATTTGATTCCCAGAGATGTTGGGAGGCTTAAGGGTTTAAA...

Protein

1 records

下载 Protein FASTA

XP_057771533.1
MQIKELEKLEASSAKNQENTAIVGQLEASVENCGAKASNFNSVIDVSGKVLDFPLVSGDESTVEEVYMYKNELNLIPRDVGRLKGLKTLKFFANELNLFPGEFRNLVELECLQVKVTEPGVSGLELSKLGNLKELELSRVPPRPSAFPILREIAGLKRLTRLSICHFSIRYLPPEIGCLINLEYLNLSFNKMRNLPDEITLLNSLVSLKVTNNKLVELPLGFSNLQRLESLDLSINRLTSIECLELESMHNLQSLNLQHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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