Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000183`

染色体: Chr07 坐标: 1165909-1169363 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000183`
名称	SmilChr07G000183
描述	meiotic recombination protein DMC1 homolog
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1165909 - 1169363 / `+`

ID 对照

NCBI Gene ID	`LOC130991375`
GeneID	`130991375`
locus_tag	`-`
NCBI Name	`LOC130991375`
原始查询	`SmilChr07G000183`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	meiotic recombination protein DMC1 homolog
产物	meiotic recombination protein DMC1 homolog
Arabidopsis	`AT3G22880` (DMC1) DNA repair (Rad51) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821860] identity=88.9; qcov=1; evalue=0; confidence=high
Rice	`Os11g0146800` (RILIM15B) - identity=87.2; qcov=0.983; evalue=0; confidence=high
GO	GO:0000150 (DNA strand exchange activity); GO:0000730 (DNA recombinase assembly); GO:0000794 (condensed nuclear chromosome); GO:0003690 (double-stranded DNA binding); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006281 (DNA repair); GO:0006312 (mitotic recombination); GO:0007131 (reciprocal meiotic recombination); GO:0016887 (ATP hydrolysis activity); GO:0042148 (DNA strand invasion); GO:0070192 (chromosome organization involved in meiotic cell cycle); GO:0140664 (ATP-dependent DNA damage sensor activity)
KEGG	-
Pfam	PF00154 (RecA_N); PF08423 (Rad51)
InterPro	-
eggNOG	-
NR	GeneID:130991375

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771534.1`
2	Cytoplasm	细胞质	1.00000	`XP_057771535.1`
3	Cytosol	细胞质基质	0.80000	`XP_057771534.1`
4	Nucleoplasm	核质	0.40000	`XP_057771534.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057771534.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1166208`	`AT`	`A`	1bp_deletion	frameshift_variant	5	A19,A21,B138,B15,C79
`Chr7:1166208`	`AT`	`A`	1bp_deletion	CDS_variant	5	A19,A21,B138,B15,C79
`Chr7:1166209`	`TA`	`T`	1bp_deletion	frameshift_variant	43	A21,B101,B109,B11,B118,B12,B130,B135,B2,B21,B24,B26,B27,B30,B32,B37,B39,B51,B61,B62,B68,B70,B79,B82,B83,B86,B95,B96,C10,C15,C16,C17,C21,C29,C34,C37,C39,C40,C43,C66,C76,C81,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771534.1

345 aa

172

345

RecA_N

Rad51

PF00154 RecA_N 102-311 aa PF08423 Rad51 102-343 aa

XP_057771535.1

343 aa

172

343

RecA_N

Rad51

PF00154 RecA_N 100-309 aa PF08423 Rad51 100-341 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771534.1`	Pfam	`PF00154`	RecA_N	Domain	102	311	5.8e-12	46.3	RecA N-terminal domain
`XP_057771534.1`	Pfam	`PF08423`	Rad51	Domain	102	343	1.5e-121	405.0	Rad51
`XP_057771535.1`	Pfam	`PF00154`	RecA_N	Domain	100	309	5.7e-12	46.4	RecA N-terminal domain
`XP_057771535.1`	Pfam	`PF08423`	Rad51	Domain	100	341	1.4e-121	405.1	Rad51

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915552.1
GCCATTTATATATCAATCACACGCCTTTTGCGCATTTGGAAATCACACTCTCATTTCTTCGGTTTACCGCGCTCGCATTCTCTGTGATAAAACTCTCTCAGTTCATCTCTCAAAACGAAGATGCTTGCATTCAAAGCTGAAGAGCAGAGCCAGCTGCAGATCGTGGAAAGGGAAGAGATCGAAGATGAAGAAGAATTGTTCGAAGCGATTGATAAACTGACAGCTCATGGAATCAATGCTGGAGATGTGAAGAAGCTGCA...

XM_057915551.1
ATTTATATATCAATCACACGCCTTTTGCGCATTTGGAAATCACACTCTCATTTCTTCGGTTTACCGCGCTCGCATTCTCTGTGATAAAACTCTCTCAGTTCATCTCTCAAAACGAAGATGCTTGCATTCAATGCCAGAGCTGAAGAGCAGAGCCAGCTGCAGATCGTGGAAAGGGAAGAGATCGAAGATGAAGAAGAATTGTTCGAAGCGATTGATAAACTGACAGCTCATGGAATCAATGCTGGAGATGTGAAGAAGCT...

CDS

2 records

下载 CDS FASTA

LOC130991375
ATGCTTGCATTCAATGCCAGAGCTGAAGAGCAGAGCCAGCTGCAGATCGTGGAAAGGGAAGAGATCGAAGATGAAGAAGAATTGTTCGAAGCGATTGATAAACTGACAGCTCATGGAATCAATGCTGGAGATGTGAAGAAGCTGCAGGATGCTGGGATCTACACATGCAATGGCTTGATGATGCACACTAAGAAGAATTTGACTGGAATCAAAGGACTTTCTGAGGCTAAAGTTGATAAGATCTGTGAAGCTGTAGAGAA...

LOC130991375
ATGCTTGCATTCAAAGCTGAAGAGCAGAGCCAGCTGCAGATCGTGGAAAGGGAAGAGATCGAAGATGAAGAAGAATTGTTCGAAGCGATTGATAAACTGACAGCTCATGGAATCAATGCTGGAGATGTGAAGAAGCTGCAGGATGCTGGGATCTACACATGCAATGGCTTGATGATGCACACTAAGAAGAATTTGACTGGAATCAAAGGACTTTCTGAGGCTAAAGTTGATAAGATCTGTGAAGCTGTAGAGAAGATAGT...

Protein

2 records

下载 Protein FASTA

XP_057771534.1
MLAFNARAEEQSQLQIVEREEIEDEEELFEAIDKLTAHGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAVEKIVNFGYMTGSDALLKRKSVVRITTGSQALDELLGGGIETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMKGGNGKVAYIDTEGTFRPDRIIPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLM...

XP_057771535.1
MLAFKAEEQSQLQIVEREEIEDEEELFEAIDKLTAHGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAVEKIVNFGYMTGSDALLKRKSVVRITTGSQALDELLGGGIETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMKGGNGKVAYIDTEGTFRPDRIIPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLMKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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