当前解析结果
SmilChr07G000185| 统一新 Gene ID | SmilChr07G000185 |
|---|---|
| 名称 | SmilChr07G000185 |
| 描述 | transmembrane emp24 domain-containing protein p24beta3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1173516 - 1176794 / - |
| NCBI Gene ID | LOC130991377 |
|---|---|
| GeneID | 130991377 |
| locus_tag | - |
| NCBI Name | LOC130991377 |
| 原始查询 | SmilChr07G000185 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transmembrane emp24 domain-containing protein p24beta3 |
| 产物 | transmembrane emp24 domain-containing protein p24beta3 |
| Arabidopsis | AT3G22845 (AT3G22845)emp24/gp25L/p24 family/GOLD family protein [Source:NCBI gene (formerly Entrezgene);Acc:821856] identity=85.3; qcov=0.936; evalue=3.09e-135; confidence=high |
| Rice | Os03g0744800 (OSJNBb0036F07.15)- identity=80.3; qcov=0.931; evalue=8.85e-122; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007030 (Golgi organization); GO:0030134 (COPII-coated ER to Golgi transport vesicle) |
| KEGG | - |
| Pfam | PF01105 (EMP24_GP25L) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991377 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057771538.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057771538.1 |
| 3 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057771538.1 |
| 4 | Cis-golgi network | Cis-golgi network | 1.00000 | XP_057771538.1 |
| 5 | Golgi stack | 高尔基堆 | 1.00000 | XP_057771538.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1173837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr7:1173849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:1173861 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | B31 |
Chr7:1173861 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | B31 |
Chr7:1173921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1174529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C64,C66,C83 |
Chr7:1174672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:1174732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:1174765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B89,C74 |
Chr7:1176576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:1176583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771538.1PF01105
EMP24_GP25L 35-209 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771538.1 |
Pfam | PF01105 |
EMP24_GP25L | Domain | 35 | 209 | 2e-48 | 165.6 | emp24/gp25L/p24 family/GOLD |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。