当前解析结果
SmilChr07G000187| 统一新 Gene ID | SmilChr07G000187 |
|---|---|
| 名称 | SmilChr07G000187 |
| 描述 | early light-induced protein 1, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1182639 - 1184020 / + |
| NCBI Gene ID | LOC130991380 |
|---|---|
| GeneID | 130991380 |
| locus_tag | - |
| NCBI Name | LOC130991380 |
| 原始查询 | SmilChr07G000187 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | early light-induced protein 1, chloroplastic-like |
| 产物 | early light-induced protein 1%2C chloroplastic-like |
| Arabidopsis | AT3G22840 (ELIP1)Chlorophyll A-B binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:821855] identity=56; qcov=0.764; evalue=4.32e-55; confidence=high |
| Rice | Os07g0178800- identity=59.1; qcov=0.523; evalue=5.17e-42; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00504 (Chloroa_b-bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991380 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771542.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057771542.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057771542.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771542.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771542.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1182809 |
C |
CA |
1bp_insertion | frameshift_variant | 24 | A1,A18,A6,B102,B113,B12,B126,B26,B27,B35,B44,B60,B62,B80,B81,B89,B93,C10,C40,C46,C47,C48,C63,C75 |
Chr7:1182827 |
CTT |
C |
2bp_deletion | frameshift_variant | 26 | A1,A2,A7,B1,B107,B109,B119,B125,B136,B50,B69,B7,B83,C13,C14,C18,C33,C36,C38,C39,C43,C44,C46,C54,C59,C86 |
Chr7:1182832 |
CT |
C |
1bp_deletion | frameshift_variant | 38 | A1,A16,A3,A6,A9,B10,B101,B102,B106,B11,B12,B123,B126,B129,B132,B27,B29,B44,B56,B62,B73,B80,B81,B82,B93,C10,C11,C19,C20,C29,C47,C69,C73,C82,C9,D11,D3,D6 |
Chr7:1182834 |
CT |
C |
1bp_deletion | frameshift_variant | 37 | A1,A16,A3,A6,A9,B10,B101,B102,B106,B11,B12,B123,B126,B129,B132,B27,B29,B44,B56,B62,B73,B80,B81,B82,B93,C10,C11,C19,C20,C29,C47,C69,C73,C82,D11,D3,D6 |
Chr7:1182861 |
A |
ACT |
2bp_insertion | frameshift_variant | 4 | A10,B117,C35,C53 |
Chr7:1182861 |
A |
ACT |
2bp_insertion | CDS_variant | 4 | A10,B117,C35,C53 |
Chr7:1182876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C74 |
Chr7:1182912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B104,B122,C12 |
Chr7:1182961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,C53 |
Chr7:1183147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B48,B53,B66,B78,C19 |
Chr7:1183605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B67,C1 |
Chr7:1183620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771542.1PF00504
Chloroa_b-bind 110-210 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771542.1 |
Pfam | PF00504 |
Chloroa_b-bind | Family | 110 | 210 | 2.1e-10 | 42.0 | Chlorophyll A-B binding protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。