Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000188`

染色体: Chr07 坐标: 1184063-1190921 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000188`
名称	SmilChr07G000188
描述	uncharacterized SmilChr07G000188
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1184063 - 1190921 / `-`

ID 对照

NCBI Gene ID	`LOC130991379`
GeneID	`130991379`
locus_tag	`-`
NCBI Name	`LOC130991379`
原始查询	`SmilChr07G000188`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dyggve-melchior-clausen syndrome protein [Source:NCBI gene (formerly Entrezgene);Acc:839439]; symbol=AT1G04200; hit=AT1G04200; species=arabidopsis; confidence=high
产物	dyggve-melchior-clausen syndrome protein [Source:NCBI gene (formerly Entrezgene);Acc:839439]; symbol=AT1G04200; hit=AT1G04200; species=arabidopsis; confidence=high
Arabidopsis	`AT1G04200` (AT1G04200) dyggve-melchior-clausen syndrome protein [Source:NCBI gene (formerly Entrezgene);Acc:839439] identity=63.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0773100` - identity=61.5; qcov=0.99; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0007030 (Golgi organization)
KEGG	-
Pfam	PF09742 (Dymeclin); PF12722 (Hid1)
InterPro	-
eggNOG	-
NR	GeneID:130991379

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057771540.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057771540.1`
3	Cytosol	细胞质基质	0.60000	`XP_057771540.1`
4	Vesicle	囊泡	0.40000	`XP_057771540.1`
5	Cytoplasm	细胞质	0.20000	`XP_057771540.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1184294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,C70
`Chr7:1184323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B17,C28,C85
`Chr7:1185027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:1185060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B30,C25
`Chr7:1185065`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr7:1185259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B24,B37,C23,D6
`Chr7:1185488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,C27
`Chr7:1185847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C53
`Chr7:1185855`	`T`	`TC`	1bp_insertion	frameshift_variant	2	A2,C28
`Chr7:1185855`	`T`	`TC`	1bp_insertion	CDS_variant	2	A2,C28
`Chr7:1185859`	`GT`	`G`	1bp_deletion	frameshift_variant	2	A2,C28
`Chr7:1185859`	`GT`	`G`	1bp_deletion	CDS_variant	2	A2,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771540.1

723 aa

362

723

Dymeclin

Hid1

PF09742 Dymeclin 1-675 aa PF12722 Hid1 374-531 aa

XP_057771541.1

722 aa

361

722

Dymeclin

Hid1

PF09742 Dymeclin 1-675 aa PF12722 Hid1 374-531 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771540.1`	Pfam	`PF09742`	Dymeclin	Family	1	675	1.9e-183	612.2	Dyggve-Melchior-Clausen syndrome protein
`XP_057771540.1`	Pfam	`PF12722`	Hid1	Family	374	531	5.7e-12	45.4	High-temperature-induced dauer-formation protein
`XP_057771541.1`	Pfam	`PF09742`	Dymeclin	Family	1	675	1.9e-183	612.2	Dyggve-Melchior-Clausen syndrome protein
`XP_057771541.1`	Pfam	`PF12722`	Hid1	Family	374	531	5.5e-12	45.5	High-temperature-induced dauer-formation protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915558.1
AAAAATTTCACTTTCAAAACTTCTGTAGAAAGTAGAAACCTTCGTGAAGAAGCAGTATTTCTGTTTTCAGATCTAACTACATTGTTAATGCGCAGCTCTCATACCAATTGAAGAATTGCTGTGTTTTGGCAGTGCTAGAAGGTCGCCGTAACGATGGGGGGACTACCGTCGACGCCGCGAGGCGGCGGAGCGCGGCCGCAGGAGACGGCTGAGTATTTAATTGGGGAATTCGTCGGTGAGAAGTCATTTCCCCTCACTTC...

XM_057915557.1
AAAATTTCACTTTCAAAACTTCTGTAGAAAGTAGAAACCTTCGTGAAGAAGCAGTATTTCTGTTTTCAGATCTAACTACATTGTTAATGCGCAGCTCTCATACCAATTGAAGAATTGCTGTGTTTTGGCAGTGCTAGAAGGTCGCCGTAACGATGGGGGGACTACCGTCGACGCCGCGAGGCGGCGGAGCGCGGCCGCAGGAGACGGCTGAGTATTTAATTGGGGAATTCGTCGGTGAGAAGTCATTTCCCCTCACTTCC...

CDS

2 records

下载 CDS FASTA

LOC130991379
ATGGGGGGACTACCGTCGACGCCGCGAGGCGGCGGAGCGCGGCCGCAGGAGACGGCTGAGTATTTAATTGGGGAATTCGTCGGTGAGAAGTCATTTCCCCTCACTTCCGATTACTGGCAGAAGCTTCTCGAGCTTCCTCTCGATCTTCACTGGCCGGCGCATCGCGTGCGCCGAGCTTGCCAGCTCTTCGCTATGAATAATTGTAAGACAAGGCACCTCACGAAGATTTTGATTAATCTAGCATGGTGCTTGCAAGAGTG...

Protein

2 records

下载 Protein FASTA

XP_057771540.1
MGGLPSTPRGGGARPQETAEYLIGEFVGEKSFPLTSDYWQKLLELPLDLHWPAHRVRRACQLFAMNNCKTRHLTKILINLAWCLQECVSASDMESPAFSKALNALFISSVFLKYLIENTRTDNFEELYLSLDETDPVPNNFSKGHHVGSFIMFSALNFISKVDVSPGTYHLHWQLLNFIVIASSTQLLSGPTPGPNDIHPFIDGIMTQESSLVNMVVHKLLLNYITRPQFSINTTSSVLFSEGNQPGVLRRVSSAAASLV...

XP_057771541.1
MGGLPSTPRGGGARPQETAEYLIGEFVGEKSFPLTSDYWQKLLELPLDLHWPAHRVRRACQLFAMNNCKTRHLTKILINLAWCLQECVSASDMESPAFSKALNALFISSVFLKYLIENTRTDNFEELYLSLDETDPVPNNFSKGHHVGSFIMFSALNFISKVDVSPGTYHLHWQLLNFIVIASSTQLLSGPTPGPNDIHPFIDGIMTQESSLVNMVVHKLLLNYITRPQFSINTTSSVLFSEGNQPGVLRRVSSAAASLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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