Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000191`

染色体: Chr07 坐标: 1204585-1207465 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000191`
名称	SmilChr07G000191
描述	acireductone dioxygenase 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1204585 - 1207465 / `-`

ID 对照

NCBI Gene ID	`LOC130991384`
GeneID	`130991384`
locus_tag	`-`
NCBI Name	`LOC130991384`
原始查询	`SmilChr07G000191`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acireductone dioxygenase 2-like
产物	acireductone dioxygenase 2-like
Arabidopsis	`AT4G14710` (ATARD2) RmlC-like cupins superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827122] identity=84.5; qcov=0.975; evalue=1.91e-98; confidence=high
Rice	`Os03g0161800` (Sip2A) - identity=74.4; qcov=0.981; evalue=4.51e-87; confidence=high
GO	GO:0010309 (acireductone dioxygenase [iron(II)-requiring] activity); GO:0019509 (GO:0019509)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF02311 (AraC_binding); PF03079 (ARD); PF07883 (Cupin_2)
InterPro	-
eggNOG	-
NR	GeneID:130991384

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057771551.1`
2	Cytoplasm	细胞质	0.80000	`XP_057771551.1`
3	Nucleoplasm	核质	0.60000	`XP_057771553.1`
4	Nucleus	细胞核	0.20000	`XP_057771552.1`
5	Chromosome	染色体	0.00000	`XP_057771551.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1204898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr7:1204899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B117,B136,B76,C35
`Chr7:1204901`	`TA`	`T`	1bp_deletion	frameshift_variant	58	A1,A14,A22,A4,A5,A7,B1,B107,B117,B119,B124,B125,B127,B132,B133,B134,B136,B138,B22,B27,B29,B3,B31,B4,B45,B50,B55,B61,B62,B64,B69,B7,B83,B91,C1,C14,C15,C23,C27,C38,C39,C43,C51,C53,C54,C57,C59,C63,C65,C72,C75,C81,C82,C86,D4,D5,D6,D9
`Chr7:1204911`	`TAA`	`T`	2bp_deletion	frameshift_variant	8	B3,B4,B54,C12,C15,C21,C42,C47
`Chr7:1204919`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B67
`Chr7:1204919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr7:1204935`	`T`	`TGG`	2bp_insertion	frameshift_variant	18	A18,B114,B132,B133,B30,B78,B90,B92,B99,C19,C28,C51,C56,C57,C6,C78,C87,D8
`Chr7:1204968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B115,C53
`Chr7:1205175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:1205228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B54,C15
`Chr7:1205358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B93,D6
`Chr7:1205366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771551.1

222 aa

111

222

ARD

Cupin_2

PF03079 ARD 14-168 aa PF07883 Cupin_2 97-153 aa

XP_057771552.1

196 aa

196

ARD

AraC_binding

Cupin_2

PF03079 ARD 14-168 aa PF02311 AraC_binding 94-152 aa PF07883 Cupin_2 97-152 aa

XP_057771553.1

159 aa

159

ARD

AraC_binding

Cupin_2

PF03079 ARD 14-156 aa PF02311 AraC_binding 94-151 aa PF07883 Cupin_2 97-152 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771551.1`	Pfam	`PF03079`	ARD	Domain	14	168	2e-64	217.3	ARD/ARD' family
`XP_057771551.1`	Pfam	`PF07883`	Cupin_2	Domain	97	153	1e-07	32.2	Cupin domain
`XP_057771552.1`	Pfam	`PF03079`	ARD	Domain	14	168	1.4e-64	217.8	ARD/ARD' family
`XP_057771552.1`	Pfam	`PF02311`	AraC_binding	Domain	94	152	0.0002	21.8	AraC-like ligand binding domain
`XP_057771552.1`	Pfam	`PF07883`	Cupin_2	Domain	97	152	6.9e-08	32.8	Cupin domain
`XP_057771553.1`	Pfam	`PF03079`	ARD	Domain	14	156	4.4e-58	196.7	ARD/ARD' family
`XP_057771553.1`	Pfam	`PF02311`	AraC_binding	Domain	94	151	0.00019	21.9	AraC-like ligand binding domain
`XP_057771553.1`	Pfam	`PF07883`	Cupin_2	Domain	97	152	1.7e-07	31.6	Cupin domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915569.1
ACAAAATCATTGACCATTGAAAAATCATTTCAAATCAAACAATAAATCACAATTCATCGAAAATTCCTATCATCCACCCATTCACATTGATTTCGTAATCGAATTTGATCTTCCTTCTTGAAATGACCGAAACACCCCCACTGATTTTCCACCGTTCAATTAACCTAGACACAAAAATGTTTTAAGTCGAGGGGTATTTTAGTCCTTATAGCAGGAATGTGAAAATATAAATCCCCAATTAAGACAGTATTTTCCAAATT...

XM_057915568.1
CACAAAAATGTTTTAAGTCGAGGGGTATTTTAGTCCTTATAGCAGGAATGTGAAAATATAAATCCCCAATTAAGACAGTATTTTCCAAATTTTGGCGTTTCTTCAAAGCTGAATTCCGCTACTGAAAGGGTTTGAGAATATGGGCTCTCTAAGCAAGGATCCGAGGGAGGAGGTTATTCAGGCGTGGTACATGGATGACAGTGATGAAGACCAGAGGCTTCCTCATCACAGAAACCCGCAAGAATTTGTGTCCTTTGAGA...

CDS

3 records

下载 CDS FASTA

LOC130991384
ATGGGCTCTCTAAGCAAGGATCCGAGGGAGGAGGTTATTCAGGCGTGGTACATGGATGACAGTGATGAAGACCAGAGGCTTCCTCATCACAGAAACCCGCAAGAATTTGTGTCCTTTGAGAAACTTGATGAGCTAGGAGTGCTTAGCTGGAGGCTTGATGCTGACAAATATGAAACTGACCCAGAGTTGAAGAAAATTCGTGAAGAACGTGGATATTCTTATATGGACTTTTGTGAAGTTTGCCCCGAAAAGCTTCCAAA...

Protein

3 records

下载 Protein FASTA

XP_057771551.1
MGSLSKDPREEVIQAWYMDDSDEDQRLPHHRNPQEFVSFEKLDELGVLSWRLDADKYETDPELKKIREERGYSYMDFCEVCPEKLPNYEEKIKNFYEEHLHTDEEIRYCVAGSGYFDVRDRDEAWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPFNRPHDHLPARCAFSLIYQCIRPSQQVVRLLPFFMRRQEYVDNYVKKAAVDAAA

XP_057771552.1
MGSLSKDPREEVIQAWYMDDSDEDQRLPHHRNPQEFVSFEKLDELGVLSWRLDADKYETDPELKKIREERGYSYMDFCEVCPEKLPNYEEKIKNFYEEHLHTDEEIRYCVAGSGYFDVRDRDEAWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPFNRPHDHLPARQEYVDNYVKKAAVDAAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器