当前解析结果
SmilChr07G000200| 统一新 Gene ID | SmilChr07G000200 |
|---|---|
| 名称 | SmilChr07G000200 |
| 描述 | uncharacterized SmilChr07G000200 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1253932 - 1256254 / - |
| NCBI Gene ID | LOC130991404 |
|---|---|
| GeneID | 130991404 |
| locus_tag | - |
| NCBI Name | LOC130991404 |
| 原始查询 | SmilChr07G000200 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415]; symbol=AT5G62950; hit=AT5G62950; species=arabidopsis; confidence=medium |
| 产物 | RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415]; symbol=AT5G62950; hit=AT5G62950; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G62950 (AT5G62950)RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415] identity=49.3; qcov=0.943; evalue=3.11e-42; confidence=medium |
| Rice | Os12g0488800- identity=51.1; qcov=0.586; evalue=8.33e-27; confidence=medium |
| GO | GO:0000166 (nucleotide binding); GO:0005666 (RNA polymerase III complex); GO:0006384 (transcription initiation at RNA polymerase III promoter) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03874 (RNA_pol_Rpb4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991404 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771598.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771598.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057771598.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771598.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771598.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1254137 |
C |
CTA |
2bp_insertion | frameshift_variant | 27 | A11,A3,B124,B20,B24,B46,B49,B50,B53,B76,B78,B79,B90,B99,C1,C11,C18,C19,C23,C26,C33,C48,C58,C63,C66,C67,C83 |
Chr7:1254164 |
CT |
C |
1bp_deletion | frameshift_variant | 36 | A3,A4,A7,B10,B106,B112,B121,B128,B132,B137,B138,B140,B28,B50,B52,B63,B65,B70,B71,B73,B75,B77,C11,C24,C29,C47,C51,C57,C59,C60,C69,C72,C73,C81,D4,D7 |
Chr7:1254166 |
CTT |
C |
2bp_deletion | frameshift_variant | 36 | A3,A4,A7,B10,B106,B112,B121,B128,B132,B137,B138,B140,B28,B50,B52,B63,B65,B70,B71,B73,B75,B77,C11,C24,C29,C47,C51,C57,C59,C60,C69,C72,C73,C81,D4,D7 |
Chr7:1254172 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B22,B26,B85,C70 |
Chr7:1254210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B44,C59,C82 |
Chr7:1254220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,C63,C77 |
Chr7:1254233 |
C |
CA |
1bp_insertion | frameshift_variant | 33 | A15,A5,A7,A8,B1,B109,B123,B136,B139,B21,B24,B27,B29,B52,B60,B67,B69,C10,C14,C16,C27,C38,C43,C45,C53,C58,C62,C70,C73,C78,C79,C85,D10 |
Chr7:1254251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr7:1254261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:1254269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:1254278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr7:1255584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771598.1PF03874
RNA_pol_Rpb4 10-117 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771598.1 |
Pfam | PF03874 |
RNA_pol_Rpb4 | Family | 10 | 117 | 4.6e-12 | 46.9 | RNA polymerase Rpb4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。