Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000204`

染色体: Chr07 坐标: 1288281-1291390 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000204`
名称	SmilChr07G000204
描述	cystathionine beta-lyase, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1288281 - 1291390 / `-`

ID 对照

NCBI Gene ID	`LOC130991400`
GeneID	`130991400`
locus_tag	`-`
NCBI Name	`LOC130991400`
原始查询	`SmilChr07G000204`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cystathionine beta-lyase, chloroplastic-like
产物	cystathionine beta-lyase%2C chloroplastic-like
Arabidopsis	`AT3G57050` (CBL) cystathionine beta-lyase [Source:NCBI gene (formerly Entrezgene);Acc:824872] identity=82.5; qcov=1; evalue=0; confidence=high
Rice	`Os06g0175800` - identity=84.1; qcov=1; evalue=0; confidence=high
GO	GO:0004121 (GO:0004121); GO:0005737 (cytoplasm); GO:0019346 (transsulfuration); GO:0030170 (pyridoxal phosphate binding); GO:0071266 ('de novo' L-methionine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2); PF00266 (Aminotran_5); PF01041 (DegT_DnrJ_EryC1); PF01053 (Cys_Met_Meta_PP)
InterPro	-
eggNOG	-
NR	GeneID:130991400

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771587.1`
2	Cytosol	细胞质基质	0.80000	`XP_057771587.1`
3	Nucleus	细胞核	0.20000	`XP_057771588.1`
4	Chromosome	染色体	0.00000	`XP_057771587.1`
5	Centromere	着丝粒	0.00000	`XP_057771587.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1288463`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:1288473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B68,C26,C39,D6
`Chr7:1288546`	`AC`	`A`	1bp_deletion	frameshift_variant	26	A1,A13,A2,B12,B130,B138,B41,B44,B51,B73,B89,B95,C20,C22,C27,C4,C59,C60,C64,C66,C74,C75,C77,C8,D11,D4
`Chr7:1288599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,C34
`Chr7:1288738`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A9
`Chr7:1288738`	`AC`	`A`	1bp_deletion	CDS_variant	1	A9
`Chr7:1288764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,C80
`Chr7:1288768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C27,C28,C60,C75,D2
`Chr7:1288784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B101,B26,B57,D3
`Chr7:1288786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B106,B128,B63,C49
`Chr7:1289046`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B65,B7,C70
`Chr7:1289071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771587.1

373 aa

186

373

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 9-368 aa PF00155 Aminotran_1_2 39-163 aa PF01041 DegT_DnrJ_EryC1 42-162 aa PF00266 Aminotran_5 77-190 aa

XP_057771588.1

371 aa

186

371

Cys_Met_Meta_PP

Aminotran_1_2

Aminotran_5

PF01053 Cys_Met_Meta_PP 9-366 aa PF00155 Aminotran_1_2 40-161 aa PF00266 Aminotran_5 111-188 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771587.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	9	368	2.4e-146	487.9	Cys/Met metabolism PLP-dependent enzyme
`XP_057771587.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	39	163	3.6e-07	30.4	Aminotransferase class I and II
`XP_057771587.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	42	162	3.5e-05	23.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771587.1`	Pfam	`PF00266`	Aminotran_5	Domain	77	190	3.6e-07	30.2	Aminotransferase class-V
`XP_057771588.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	9	366	9.8e-144	479.3	Cys/Met metabolism PLP-dependent enzyme
`XP_057771588.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	40	161	1.2e-05	25.4	Aminotransferase class I and II
`XP_057771588.1`	Pfam	`PF00266`	Aminotran_5	Domain	111	188	1.1e-06	28.6	Aminotransferase class-V

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915604.1
GTTCATAGAGGAATGTGAGTCGGAGCCATGTATGGAAGATAAGGCCAAAGAGCTCATAGAGACCATCACACGGGTTTTGCCGCCTCATCCGTCTCAGGTGGATGAAGCGAACGATGAAGCTGCCGAGGGGGAGGAGACGGACGGGGAAGCTGCTGAGGGGGACGAAGAGATTGAGCCTGAACCAAATACTACATAGGGTTATCAACATTAGACATAAATACTAATTATAAAAGTAAAAAAGATTAGTATTTACTCGCAAG...

XM_057915605.1
ACTTTTTCGAGAAATGATATTGTAAAAAGTAAAAACTTAAAAAGTATGATTGTCATTTTGGGATGTTTGAGAAATTAAAAAGTATGATTGTCAAGGCATGACGTGTTAAAGTTTGCACAATTGTAATGTAATAAACTTGTGACAGAAGAAGAGATCATACAAACAAGTCGCCAAGTGGAGCCAAGTGTTTCCACGGTGTTGATGAATTTTTCCAATGAGTTTGATCCTTATGAGGCTTTAAGCACGCCTCTATATCAAAC...

CDS

2 records

下载 CDS FASTA

LOC130991400
ATGAATTTTTCCAATGAGTTTGATCCTTATGAGGCTTTAAGCACGCCTCTATATCAAACAGCAACTTTCAAGCAGCCTTCAGCTACGGAACCTGGAACTTATGATTATACAAGAAGTGGAAATCCTACTCGGGATACCCTAGAAAGACTTCTTGCAAAGCTCGACAAAGCCGACCGAGCATTATGCTTCACCAGCGGAATGGCAGCTTTAGCAGCTGTTACTCATCTAGTTGGTGATGAGATTGTTTCTGGTGACGACAT...

Protein

2 records

下载 Protein FASTA

XP_057771587.1
MNFSNEFDPYEALSTPLYQTATFKQPSATEPGTYDYTRSGNPTRDTLERLLAKLDKADRALCFTSGMAALAAVTHLVGTGDEIVSGDDMYGGSDRLLSQVTPKSGIVVKRVDTTNLEEVASAITPRTKLVWLESPTNPRQQISDLRKIAELAHARGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDLMAGVLAIKGESLAKDLYFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQENAQKIAEFLTSHPR...

XP_057771588.1
MNFSNEFDPYEALSTPLYQTATFKQPSATEPGTYDYTRSGNPTRDTLERLLAKLDKADRALCFTSGMAALAAVTHLVGDEIVSGDDMYGGSDRLLSQVTPKSGIVVKRVDTTNLEEVASAITPRTKLVWLESPTNPRQQISDLRKIAELAHARGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDLMAGVLAIKGESLAKDLYFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQENAQKIAEFLTSHPRVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器