当前解析结果
SmilChr07G000209| 统一新 Gene ID | SmilChr07G000209 |
|---|---|
| 名称 | SmilChr07G000209 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1329631 - 1332931 / - |
| NCBI Gene ID | LOC130991389 |
|---|---|
| GeneID | 130991389 |
| locus_tag | - |
| NCBI Name | LOC130991389 |
| 原始查询 | SmilChr07G000209 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G10920 (LOV1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:837635] identity=28.7; qcov=0.83; evalue=1.19e-71; confidence=low |
| Rice | Os07g0186500- identity=29.4; qcov=0.956; evalue=7.9e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991389 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057771557.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057771557.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057771557.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771557.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771557.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1330252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:1330254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:1330255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B31,B43,C49,C76 |
Chr7:1330261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr7:1330268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,B76,C40,C9 |
Chr7:1330280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,B62,C22,C86 |
Chr7:1330292 |
CA |
C |
1bp_deletion | frameshift_variant | 11 | B101,B118,B120,B132,B23,B61,B90,C16,C35,C43,D5 |
Chr7:1330298 |
T |
TC |
1bp_insertion | frameshift_variant | 11 | B101,B118,B120,B132,B23,B61,B90,C16,C35,C43,D5 |
Chr7:1330306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C86 |
Chr7:1330323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,C35,D8 |
Chr7:1330345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B30,C15,D2 |
Chr7:1330356 |
G |
GCT |
2bp_insertion | frameshift_variant | 24 | A1,A16,A22,A8,B101,B115,B130,B15,B27,B50,B61,B70,B82,B91,B95,C1,C41,C50,C55,C57,C59,C63,C80,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771557.1PF00931
NB-ARC 165-332 aa
PF23559
WHD_DRP 415-485 aa
PF23598
LRR_14 565-860 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771557.1 |
Pfam | PF00931 |
NB-ARC | Domain | 165 | 332 | 6.4e-43 | 147.0 | NB-ARC domain |
XP_057771557.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 415 | 485 | 6.8e-20 | 71.6 | Disease resistance protein Winged helix domain |
XP_057771557.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 565 | 860 | 2.2e-14 | 53.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。