Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000210`

染色体: Chr07 坐标: 1333606-1337818 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000210`
名称	SmilChr07G000210
描述	cystathionine beta-lyase, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1333606 - 1337818 / `-`

ID 对照

NCBI Gene ID	`LOC130991396`
GeneID	`130991396`
locus_tag	`-`
NCBI Name	`LOC130991396`
原始查询	`SmilChr07G000210`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cystathionine beta-lyase, chloroplastic-like
产物	cystathionine beta-lyase%2C chloroplastic-like
Arabidopsis	`AT3G57050` (CBL) cystathionine beta-lyase [Source:NCBI gene (formerly Entrezgene);Acc:824872] identity=76.6; qcov=0.9; evalue=0; confidence=high
Rice	`Os06g0175800` - identity=83.7; qcov=0.811; evalue=0; confidence=high
GO	GO:0004121 (GO:0004121); GO:0005737 (cytoplasm); GO:0019346 (transsulfuration); GO:0030170 (pyridoxal phosphate binding); GO:0071266 ('de novo' L-methionine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2); PF00266 (Aminotran_5); PF01041 (DegT_DnrJ_EryC1); PF01053 (Cys_Met_Meta_PP)
InterPro	-
eggNOG	-
NR	GeneID:130991396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057771566.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057771566.1`
3	Nucleus	细胞核	0.00000	`XP_057771566.1`
4	Chromosome	染色体	0.00000	`XP_057771566.1`
5	Centromere	着丝粒	0.00000	`XP_057771566.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1333753`	`A`	`AG`	1bp_insertion	frameshift_variant	3	B22,B85,C70
`Chr7:1333753`	`A`	`AG`	1bp_insertion	CDS_variant	3	B22,B85,C70
`Chr7:1333771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B125,B56,D11
`Chr7:1333781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr7:1333782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:1333799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B103,C32
`Chr7:1333800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B85
`Chr7:1333815`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C79,D3
`Chr7:1333841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B13
`Chr7:1333883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B96,C23
`Chr7:1333896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,B65
`Chr7:1333899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,A8,B1,B136,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771566.1

471 aa

236

471

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 96-466 aa PF00155 Aminotran_1_2 137-261 aa PF01041 DegT_DnrJ_EryC1 140-260 aa PF00266 Aminotran_5 175-288 aa

XP_057771567.1

471 aa

236

471

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 96-466 aa PF00155 Aminotran_1_2 137-261 aa PF01041 DegT_DnrJ_EryC1 140-260 aa PF00266 Aminotran_5 175-288 aa

XP_057771568.1

471 aa

236

471

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 96-466 aa PF00155 Aminotran_1_2 137-261 aa PF01041 DegT_DnrJ_EryC1 140-260 aa PF00266 Aminotran_5 175-288 aa

XP_057771569.1

471 aa

236

471

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 96-466 aa PF00155 Aminotran_1_2 137-261 aa PF01041 DegT_DnrJ_EryC1 140-260 aa PF00266 Aminotran_5 175-288 aa

XP_057771570.1

470 aa

235

470

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 95-465 aa PF00155 Aminotran_1_2 136-260 aa PF01041 DegT_DnrJ_EryC1 139-259 aa PF00266 Aminotran_5 174-287 aa

XP_057771571.1

470 aa

235

470

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 95-465 aa PF00155 Aminotran_1_2 136-260 aa PF01041 DegT_DnrJ_EryC1 139-259 aa PF00266 Aminotran_5 174-287 aa

XP_057771572.1

470 aa

235

470

Cys_Met_Meta_PP

Aminotran_1_2

DegT_DnrJ_EryC1

Aminotran_5

PF01053 Cys_Met_Meta_PP 95-465 aa PF00155 Aminotran_1_2 136-260 aa PF01041 DegT_DnrJ_EryC1 139-259 aa PF00266 Aminotran_5 174-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771566.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	96	466	3.5e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771566.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	137	261	5e-07	30.0	Aminotransferase class I and II
`XP_057771566.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	140	260	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771566.1`	Pfam	`PF00266`	Aminotran_5	Domain	175	288	4e-07	30.1	Aminotransferase class-V
`XP_057771567.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	96	466	3.5e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771567.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	137	261	5e-07	30.0	Aminotransferase class I and II
`XP_057771567.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	140	260	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771567.1`	Pfam	`PF00266`	Aminotran_5	Domain	175	288	4e-07	30.1	Aminotransferase class-V
`XP_057771568.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	96	466	3.5e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771568.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	137	261	5e-07	30.0	Aminotransferase class I and II
`XP_057771568.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	140	260	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771568.1`	Pfam	`PF00266`	Aminotran_5	Domain	175	288	4e-07	30.1	Aminotransferase class-V
`XP_057771569.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	96	466	3.5e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771569.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	137	261	5e-07	30.0	Aminotransferase class I and II
`XP_057771569.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	140	260	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771569.1`	Pfam	`PF00266`	Aminotran_5	Domain	175	288	4e-07	30.1	Aminotransferase class-V
`XP_057771570.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	95	465	3.4e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771570.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	136	260	5e-07	30.0	Aminotransferase class I and II
`XP_057771570.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	139	259	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771570.1`	Pfam	`PF00266`	Aminotran_5	Domain	174	287	4.6e-07	29.9	Aminotransferase class-V
`XP_057771571.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	95	465	3.4e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771571.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	136	260	5e-07	30.0	Aminotransferase class I and II
`XP_057771571.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	139	259	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771571.1`	Pfam	`PF00266`	Aminotran_5	Domain	174	287	4.6e-07	29.9	Aminotransferase class-V
`XP_057771572.1`	Pfam	`PF01053`	Cys_Met_Meta_PP	Domain	95	465	3.4e-146	487.4	Cys/Met metabolism PLP-dependent enzyme
`XP_057771572.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	136	260	5e-07	30.0	Aminotransferase class I and II
`XP_057771572.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	139	259	7e-05	22.9	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057771572.1`	Pfam	`PF00266`	Aminotran_5	Domain	174	287	4.6e-07	29.9	Aminotransferase class-V

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057915586.1
AAAACCAGCTAAACGGGTCGGGTTTCTGCAACCAAATTGAATTCAAGTATTTAACTGCAAACTTACAAAGCCTTCACCATTTCCCCCAAAACACAGAACCCTTAAAACCCCATCTCCATTAAACGCTCATTTCTCTCTCTAGAAGCAAAGCTTTTCTCCTCTCTCTCTCTCAATCGCGCCGACCATCATAGCCGGACAGATCAACAATTGCCGCGCCTCCTGAGTTTTAAAGTTGAGACTATGGCTGCCGCTGCTTCATC...

XM_057915584.1
CACCATTTCCCCCAAAACACAGAACCCTTAAAACCCCATCTCCATTAAACGCTCATTTCTCTCTCTAGAAGCAAAGCTTTTCTCCTCTCTCTCTCTCAATCGCGCCGACCATCATAGCCGGACAGATCAACAATTGCCGCGCCTCCTGAGTTTTAAAGTGTTGTGAGACTATGGCTGCCGCTGCTTCATCTCTCACATCATTCTTTACCACTCTTCAAATCAACCAAATTGATCAAAATGGTTTTCCCAGCGGTAATATC...

CDS

7 records

下载 CDS FASTA

LOC130991396
ATGGCTGCCGCTGCTTCATCTCTCACATCATTCTTTACCACTCTTCAAATCAACCAAATTGATCAAAATGGTTTTCCCAGCGGTAATATCCCATTGCATAACGAATACAAAGCAATAGTGCTCAAGAAGGGATGCTTTTCTGTGGGTGAGCGAAACCTTAAAATAAATTGCTTGAGATACAAAGGGATGGATGTCAGCACGTCTGCTTTGGTTGATGGAGTTGCCGAATGCACAAATGAAGAGATCATACAAACAAGTCG...

Protein

7 records

下载 Protein FASTA

XP_057771566.1
MAAAASSLTSFFTTLQINQIDQNGFPSGNIPLHNEYKAIVLKKGCFSVGERNLKINCLRYKGMDVSTSALVDGVAECTNEEEIIQTSRTVEPSVSTLLMNFSNDFDPYEALSTPLYQTATFKQPSATEPGTYDYTRSGNPTRDTLERLLAKLDKADRALCFTSGMAALAAVTHLVGTGDEIVSGDDMYGGSDRLLSQVTPKSGIVVKRVDTTNLEEVASAITPRTKLVWLESPTNPRQQISDLRKIAELAHARGALVLVD...

XP_057771567.1
MAAAASSLTSFFTTLQINQIDQNGFPSGNIPLHNEYKAIVLKKGCFSVGERNLKINCLRYKGMDVSTSALVDGVAECTNEEEIIQTSRTVEPSVSTLLMNFSNDFDPYEALSTPLYQTATFKQPSATEPGTYDYTRSGNPTRDTLERLLAKLDKADRALCFTSGMAALAAVTHLVGTGDEIVSGDDMYGGSDRLLSQVTPKSGIVVKRVDTTNLEEVASAITPRTKLVWLESPTNPRQQISDLRKIAELAHARGALVLVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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