Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000212`

染色体: Chr07 坐标: 1342792-1346284 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000212`
名称	SmilChr07G000212
描述	VAN3-binding protein-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1342792 - 1346284 / `-`

ID 对照

NCBI Gene ID	`LOC130991409`
GeneID	`130991409`
locus_tag	`-`
NCBI Name	`LOC130991409`
原始查询	`SmilChr07G000212`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	VAN3-binding protein-like
产物	VAN3-binding protein-like
Arabidopsis	`AT3G22810` (AT3G22810) auxin canalization protein (DUF828) [Source:NCBI gene (formerly Entrezgene);Acc:821852] identity=68.7; qcov=1.03; evalue=0; confidence=high
Rice	`Os12g0604200` - identity=62; qcov=0.7; evalue=8.06e-85; confidence=high
GO	GO:0009734 (auxin-activated signaling pathway); GO:0010087 (phloem or xylem histogenesis); GO:0010305 (leaf vascular tissue pattern formation)
KEGG	-
Pfam	PF05703 (Auxin_canalis); PF08458 (PH_2)
InterPro	-
eggNOG	-
NR	GeneID:130991409

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771607.1`
2	Cytosol	细胞质基质	0.40000	`XP_057771607.1`
3	Nucleus	细胞核	0.00000	`XP_057771607.1`
4	Chromosome	染色体	0.00000	`XP_057771607.1`
5	Centromere	着丝粒	0.00000	`XP_057771607.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1343215`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B104
`Chr7:1343215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:1343774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C13
`Chr7:1343920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,B38,B39,C54
`Chr7:1344057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,C72
`Chr7:1344090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr7:1344117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C2,C37,C48,C60
`Chr7:1344122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,C18,C86
`Chr7:1344146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr7:1344165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C48,C60
`Chr7:1344216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr7:1344234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771607.1

471 aa

236

471

Auxin_canalis

PH_2

PF05703 Auxin_canalis 13-313 aa PF08458 PH_2 356-460 aa

XP_057771608.1

470 aa

235

470

Auxin_canalis

PH_2

PF05703 Auxin_canalis 13-312 aa PF08458 PH_2 355-459 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771607.1`	Pfam	`PF05703`	Auxin_canalis	Family	13	313	4.7e-113	378.2	Auxin canalisation
`XP_057771607.1`	Pfam	`PF08458`	PH_2	Domain	356	460	5.7e-42	143.1	Plant pleckstrin homology-like region
`XP_057771608.1`	Pfam	`PF05703`	Auxin_canalis	Family	13	312	2.4e-112	375.9	Auxin canalisation
`XP_057771608.1`	Pfam	`PF08458`	PH_2	Domain	355	459	5.7e-42	143.1	Plant pleckstrin homology-like region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915625.1
CAGTTTCTGTAGCTATTTCCTTTCTCTCCCAACACGAAGCATCTCTCTCTCTCTCTCTACACATTCTATATAGCAAACTAACTAGTACTCACTGAGCTTCCCCATTACTTCTCACTCTCTTCCACTTCACAAACACAACACACTCACTCGTAGTTGAAATGGAGCGGGCCAAACTCAAGCCCATCTACAGACCCCCAGAGACTCCATTGGAGCCAATGGAGTTCCTCTCCCGCTCTTGGAGCGTCTCCGCCTTCGAAATC...

XM_057915624.1
AGTTTCTGTAGCTATTTCCTTTCTCTCCCAACACGAAGCATCTCTCTCTCTCTCTCTACACATTCTATATAGCAAACTAACTAGTACTCACTGAGCTTCCCCATTACTTCTCACTCTCTTCCACTTCACAAACACAACACACTCACTCGTAGTTGAAATGGAGCGGGCCAAACTCAAGCCCATCTACAGACCCCCAGAGACTCCATTGGAGCCAATGGAGTTCCTCTCCCGCTCTTGGAGCGTCTCCGCCTTCGAAATCT...

CDS

2 records

下载 CDS FASTA

LOC130991409
ATGGAGCGGGCCAAACTCAAGCCCATCTACAGACCCCCAGAGACTCCATTGGAGCCAATGGAGTTCCTCTCCCGCTCTTGGAGCGTCTCCGCCTTCGAAATCTCCAAAGTCCTAGCTCCCCACCACCCCCCTCCCAAAGCCCACCCCGATCACCGCCGCCCCGCCCCCGCCGATATCATATACGAAGACGTCTCCGCCGAGCTCGAGGAATCCGCCGCCGCCACCGTCTCCGGCAACCCCTTCTCATTCGCTTCTTCAGA...

Protein

2 records

下载 Protein FASTA

XP_057771607.1
MERAKLKPIYRPPETPLEPMEFLSRSWSVSAFEISKVLAPHHPPPKAHPDHRRPAPADIIYEDVSAELEESAAATVSGNPFSFASSETSQLVMERIMSQSQEVSPRTSGRLSHSSGPLNGGSLTDSPPVSPSELDDLKACMHQYNRVNIPVSKPYKSGVVGGGAAAPSGGGRTVGRWLKDRREKKKEEARAHNAQLHAAISVAGVASAVAAIAAATAASSGAGKDEIMAKTDMAVASAATLVAAQCVEAAEAMGAERDHL...

XP_057771608.1
MERAKLKPIYRPPETPLEPMEFLSRSWSVSAFEISKVLAPHHPPPKAHPDHRRPAPADIIYEDVSAELEESAAATVSGNPFSFASSETSQLVMERIMSQSEVSPRTSGRLSHSSGPLNGGSLTDSPPVSPSELDDLKACMHQYNRVNIPVSKPYKSGVVGGGAAAPSGGGRTVGRWLKDRREKKKEEARAHNAQLHAAISVAGVASAVAAIAAATAASSGAGKDEIMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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