Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000214

染色体: Chr07 坐标: 1372660-1376525 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000214
名称SmilChr07G000214
描述uncharacterized SmilChr07G000214
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向1372660 - 1376525 / -

ID 对照

NCBI Gene IDLOC130991412
GeneID130991412
locus_tag-
NCBI NameLOC130991412
原始查询SmilChr07G000214

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129]; symbol=AT4G14746; hit=AT4G14746; species=arabidopsis; confidence=medium
产物neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129]; symbol=AT4G14746; hit=AT4G14746; species=arabidopsis; confidence=medium
ArabidopsisAT4G14746 (AT4G14746)
neurogenic locus notch-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827129]
identity=44.2; qcov=0.945; evalue=2.85e-48; confidence=medium
RiceOs11g0582000
-
identity=42.8; qcov=0.697; evalue=9.59e-38; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991412

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057771610.1
2 Nucleus 细胞核 0.00000 XP_057771610.1
3 Chromosome 染色体 0.00000 XP_057771610.1
4 Centromere 着丝粒 0.00000 XP_057771610.1
5 Chromatin 染色质 0.00000 XP_057771610.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:1373007 G A EMS_canonical_SNV CDS_variant 2 B34,B68
Chr7:1373250 C T EMS_canonical_SNV CDS_variant 1 C37
Chr7:1373259 G A EMS_canonical_SNV CDS_variant 1 D6
Chr7:1373291 C T EMS_canonical_SNV CDS_variant 1 C6
Chr7:1373893 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:1374822 G A EMS_canonical_SNV CDS_variant 2 B56,B96
Chr7:1374832 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:1374873 C T EMS_canonical_SNV CDS_variant 1 B58
Chr7:1376417 C T EMS_canonical_SNV CDS_variant 3 A23,B5,C8
Chr7:1376435 G A EMS_canonical_SNV CDS_variant 5 B24,C16,C24,C39,C83
Chr7:1376440 C T EMS_canonical_SNV CDS_variant 2 B84,C41
Chr7:1376487 G A EMS_canonical_SNV CDS_variant 5 A6,B129,C18,C55,C86

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057915627.1
TTTGTAAGGAAGTTTGAAAATGCCTACTGTTCATTATGCTGCTTTTCTTGCAGTTACACTCGCTCTCCGATGTTCCGCCGCCGCCGCCAACTTCGCCGTCCCATTTCTGTCGCCTTTTATCGGCGATGAAGCGTGCAAAACAGACGTTTGCGGAAAGGGAAGCTGCGTGCCTTCGAGCAGTAGCATTTTTGGATTCGAGTGTCAATGCCAGCAAGGATGGAGACAAACTCGCTCCGATGATGATCAGTTCTTCAAATTCC...
XM_057915628.1
TGACTTCACCACAGTCCACGATTTCTACTTCCAAATCGAAATCAAAATCGAAATCCCATATTTTTTTTCATACTATATATCTCAGCCCATAATTAATTGCAGCACCGAAATAGCCCAACTATTTTCTCTTTTTTGCCTTCATCGAATTTCACTACACATTTCTCTTATAATTTTCTGTCGAAATTCGAACATGGCTACTGTTAAGTATGCTGCTTTTGTTGCTATTACACTCGCCCTCGGATCTGCCTACGTTTCCGCCA...

CDS

2 records

下载 CDS FASTA
LOC130991412
ATGCCTACTGTTCATTATGCTGCTTTTCTTGCAGTTACACTCGCTCTCCGATGTTCCGCCGCCGCCGCCAACTTCGCCGTCCCATTTCTGTCGCCTTTTATCGGCGATGAAGCGTGCAAAACAGACGTTTGCGGAAAGGGAAGCTGCGTGCCTTCGAGCAGTAGCATTTTTGGATTCGAGTGTCAATGCCAGCAAGGATGGAGACAAACTCGCTCCGATGATGATCAGTTCTTCAAATTCCTGCCTTGCATCGTTCCCAA...
LOC130991412
ATGGCTACTGTTAAGTATGCTGCTTTTGTTGCTATTACACTCGCCCTCGGATCTGCCTACGTTTCCGCCAACTTCACCATCCCATCTCTCTTCCCATCTTTCGGCGATGAAGCGTGCAAAACAGACGTTTGCGGAAAGGGAAGCTGCGTGCCTTCGAGCAGTAGCATTTTTGGATTCGAGTGTCAATGCCAGCAAGGATGGAGACAAACTCGCTCCGATGATGATCAGTTCTTCAAATTCCTGCCTTGCATCGTTCCCAA...

Protein

2 records

下载 Protein FASTA
XP_057771610.1
MPTVHYAAFLAVTLALRCSAAAANFAVPFLSPFIGDEACKTDVCGKGSCVPSSSSIFGFECQCQQGWRQTRSDDDQFFKFLPCIVPNCTVSFNCDKSTAPAPAPNPKNSNYSVFDPCSWSDCGGGSCNKTSVFTHSCFCEEGYYNLFNSTSFPCYKQCAIGGDCPKLGISMMNSSNPSSPRSVVGDSESHASRLITRAELSWLMTMVATLAPFVWNCS
XP_057771611.1
MATVKYAAFVAITLALGSAYVSANFTIPSLFPSFGDEACKTDVCGKGSCVPSSSSIFGFECQCQQGWRQTRSDDDQFFKFLPCIVPNCTVSFNCDKSTAPAPAPNPKNSNYSVFDPCSWSDCGGGSCNKTSVFTHSCFCEEGYYNLFNSTSFPCYKQCAIGGDCPKLGISMMNSSNPSSPRSVVGDSESHASRLITRAELSWLMTMVATLAPFVWNCS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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