Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000225`

染色体: Chr07 坐标: 1439669-1443314 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000225`
名称	SmilChr07G000225
描述	uncharacterized SmilChr07G000225
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1439669 - 1443314 / `-`

ID 对照

NCBI Gene ID	`LOC130991422`
GeneID	`130991422`
locus_tag	`-`
NCBI Name	`LOC130991422`
原始查询	`SmilChr07G000225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839442]; symbol=TPR3; hit=AT1G04190; species=arabidopsis; confidence=high
产物	Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839442]; symbol=TPR3; hit=AT1G04190; species=arabidopsis; confidence=high
Arabidopsis	`AT1G04190` (TPR3) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839442] identity=72.3; qcov=0.994; evalue=9.75e-179; confidence=high
Rice	`Os12g0604800` - identity=71.2; qcov=0.956; evalue=2.07e-170; confidence=high
GO	GO:0051879 (Hsp90 protein binding)
KEGG	-
Pfam	PF13414 (TPR_11); PF13432 (TPR_16)
InterPro	-
eggNOG	-
NR	GeneID:130991422

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057771619.1`
2	Cytoplasm	细胞质	0.80000	`XP_057771619.1`
3	Nucleus	细胞核	0.00000	`XP_057771619.1`
4	Chromosome	染色体	0.00000	`XP_057771619.1`
5	Centromere	着丝粒	0.00000	`XP_057771619.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1440016`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B3,B4,B54,C12,C15,C21,C42
`Chr7:1440060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr7:1440137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr7:1441845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B82
`Chr7:1441867`	`TGG`	`T`	2bp_deletion	frameshift_variant	11	A22,A25,B110,B111,B135,B47,C1,C51,C72,C76,C86
`Chr7:1441964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B139
`Chr7:1442981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B33,C56,C57
`Chr7:1443001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:1443030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:1443067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B133,B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771619.1

333 aa

166

333

TPR_16

TPR_11

PF13432 TPR_16 16-68 aa PF13414 TPR_11 18-56 aa

XP_057771620.1

320 aa

160

320

TPR_16

TPR_11

PF13432 TPR_16 16-68 aa PF13414 TPR_11 18-56 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771619.1`	Pfam	`PF13432`	TPR_16	Repeat	16	68	1.1e-11	45.6	Tetratricopeptide repeat
`XP_057771619.1`	Pfam	`PF13414`	TPR_11	Repeat	18	56	4.2e-11	43.0	TPR repeat
`XP_057771620.1`	Pfam	`PF13432`	TPR_16	Repeat	16	68	1e-11	45.8	Tetratricopeptide repeat
`XP_057771620.1`	Pfam	`PF13414`	TPR_11	Repeat	18	56	3.9e-11	43.2	TPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915637.1
TTTTTTGATATTATTTGACGATTTATGATAAATAGTTTGCCAGATTTTAACCAGAGAATGTCTCCAACAAAACTAGCAAATAAACTAAGAAATCATAAATCTCAGAAACCCTAATCAAAAACCACACCATCAGTTCATAGAAAGAAACACAGTTAATCAGTATTGAATTTTGAAGGTATACGAGAAAGATGGGAGAATCTGAAGGGCAAACAGCAGCAGAGGTTTCGCTGAAAGATCAGGGCAATGAGTTTTTCAAAGCA...

XM_057915636.1
ATATTATTTGACGATTTATGATAAATAGTTTGCCAGATTTTAACCAGAGAATGTCTCCAACAAAACTAGCAAATAAACTAAGAAATCATAAATCTCAGAAACCCTAATCAAAAACCACACCATCAGTTCATAGAAAGAAACACAGTTAATCAGTATTGAATTTTGAAGGTATACGAGAAAGATGGGAGAATCTGAAGGGCAAACAGCAGCAGAGGTTTCGCTGAAAGATCAGGGCAATGAGTTTTTCAAAGCAGGGAATT...

CDS

2 records

下载 CDS FASTA

LOC130991422
ATGGGAGAATCTGAAGGGCAAACAGCAGCAGAGGTTTCGCTGAAAGATCAGGGCAATGAGTTTTTCAAAGCAGGGAATTATCTCAAAGCGGCAGCTCTTTACACTCAGGCTATCAAGAAGGATCCCTCTAATCCCACTCTTTACAGCAATCGTGCTGCTGCATTTCTGCATTTGGTAAAACTTAACAAAGCTCTAGCTGATGCAGAAACAACAATCAGTTTGAAACCAGATTGGGAAAAGGGTTATTTCAGGAAGGGATG...

Protein

2 records

下载 Protein FASTA

XP_057771619.1
MGESEGQTAAEVSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNPTLYSNRAAAFLHLVKLNKALADAETTISLKPDWEKGYFRKGCVLEALERYDDALAAFQVALKYNSQSSEVSKKIKRLTQLAKDKKRSQEVEASRSNVDMTKHLDSLKTELSGKYGAEDSWKEIFSFVVETMESAIKSWHQNSTVDPRTYFLIHKDKTDTEKYAPVVNIDKAFESPHTHSNCFSFLRQYAEDSFSQAACLVVPKNIISYPQVWKGQ...

XP_057771620.1
MGESEGQTAAEVSLKDQGNEFFKAGNYLKAAALYTQAIKKDPSNPTLYSNRAAAFLHLVKLNKALADAETTISLKPDWEKGYFRKGCVLEALERYDDALAAFQVALKYNSQSSEVSKKIKRLTQLAKDKKRSQEVEASRSNVDMTKHLDSLKTELSGKYGAEDSWKEIFSFVVETMESAIKSWHQNSTVDPRTYFLIHKDKTDTEKYAPVVNIDKAFESPHTHSNCFSFLRQYAEDSFSQAACLVVPKNIISYPQVWKGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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