Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000228`

染色体: Chr07 坐标: 1472369-1478410 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000228`
名称	SmilChr07G000228
描述	protein tesmin/TSO1-like CXC 2
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1472369 - 1478410 / `-`

ID 对照

NCBI Gene ID	`LOC130991425`
GeneID	`130991425`
locus_tag	`-`
NCBI Name	`LOC130991425`
原始查询	`SmilChr07G000228`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein tesmin/TSO1-like CXC 2
产物	protein tesmin/TSO1-like CXC 2
Arabidopsis	`AT3G22780` (TSO1) Tesmin/TSO1-like CXC domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821849] identity=41; qcov=1.01; evalue=1.85e-145; confidence=medium
Rice	`Os07g0176200` - identity=38.8; qcov=1.02; evalue=7.38e-123; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF03638 (TCR)
InterPro	-
eggNOG	-
NR	GeneID:130991425

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771624.1`
2	Chromosome	染色体	0.00000	`XP_057771624.1`
3	Centromere	着丝粒	0.00000	`XP_057771624.1`
4	Chromatin	染色质	0.00000	`XP_057771624.1`
5	Telomere	端粒	0.00000	`XP_057771624.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1472593`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr7:1472650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B124,B2,B35,C37
`Chr7:1472725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B124,B2
`Chr7:1472848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B2
`Chr7:1474103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:1474165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr7:1474210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:1474217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:1474263`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B17,C24,C30,C36,C6,C8
`Chr7:1474293`	`G`	`A`	EMS_canonical_SNV	stop_gained	62	A15,A22,A25,A7,A8,B1,B101,B103,B106,B11,B110,B114,B131,B135,B139,B17,B2,B21,B27,B34,B47,B52,B53,B6,B64,B69,B73,B77,B83,B93,C1,C13,C14,C19,C2,C22,C23,C27,C34,C36,C37,C38,C39,C43,C46,C48,C62,C65,C67,C72,C73,C76,C79,C80,C82,C84,C85,D11,D2,D3,D6,D7
`Chr7:1474315`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C74,D6
`Chr7:1474324`	`A`	`AG`	1bp_insertion	frameshift_variant	52	A13,A14,A18,A9,B100,B112,B115,B117,B13,B132,B135,B136,B21,B23,B24,B28,B32,B35,B36,B37,B40,B52,B56,B57,B58,B66,B69,B71,B77,B78,B79,B80,B87,B91,B93,B94,B96,C16,C20,C22,C33,C44,C45,C63,C64,C73,C74,C78,C80,C85,C9,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771624.1

801 aa

400

801

TCR

PF03638 TCR 486-521 aa PF03638 TCR 571-607 aa

XP_057771625.1

774 aa

387

774

TCR

PF03638 TCR 486-521 aa PF03638 TCR 571-607 aa

XP_057771626.1

774 aa

387

774

TCR

PF03638 TCR 486-521 aa PF03638 TCR 571-607 aa

XP_057771627.1

774 aa

387

774

TCR

PF03638 TCR 486-521 aa PF03638 TCR 571-607 aa

XP_057771628.1

766 aa

383

766

TCR

PF03638 TCR 478-513 aa PF03638 TCR 563-599 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771624.1`	Pfam	`PF03638`	TCR	Domain	486	521	7.2e-24	84.5	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771624.1`	Pfam	`PF03638`	TCR	Domain	571	607	7.2e-24	84.5	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771625.1`	Pfam	`PF03638`	TCR	Domain	486	521	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771625.1`	Pfam	`PF03638`	TCR	Domain	571	607	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771626.1`	Pfam	`PF03638`	TCR	Domain	486	521	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771626.1`	Pfam	`PF03638`	TCR	Domain	571	607	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771627.1`	Pfam	`PF03638`	TCR	Domain	486	521	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771627.1`	Pfam	`PF03638`	TCR	Domain	571	607	6.9e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771628.1`	Pfam	`PF03638`	TCR	Domain	478	513	6.6e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057771628.1`	Pfam	`PF03638`	TCR	Domain	563	599	6.6e-24	84.6	Tesmin/TSO1-like CXC domain, cysteine-rich domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057915643.1
GAAAGAGATTTGGCCTCCATAGAAACCGACCGCCATCAACAAAAAAAGTAAAAACCCACAAAAATTGCATAACTGAGCATTGAAAGCCAAACTGATCAATAGATTTTCTTGGAGAAGTCAATCCCCCTCTCATGCTAAATATATGATAAACCCTAATTTGTCAAATATGATGATGAAGATGATGAGAAAATCAAGAAACGGATGGGAGAAAATAAATGAGTTCCTCTATTAGGAAATTACAGTTTAGGGTATTTGAGTTT...

XM_057915641.1
GAAAGAGATTTGGCCTCCATAGAAACCGACCGCCATCAACAAAAAAAGTAAAAACCCACAAAAATTGCATAACTGAGCATTGAAAGCCAAACTGATCAATAGATTTTCTTGGAGAAGTCAATCCCCCTCTCATGCTAAATATATGATAAACCCTAATTTGTCAAATATGATGATGAAGATGATGAGAAAATCAAGAAACGGATGGGAGAAAATAAATGAGTTCCTCTATTAGGAAATTACAGTTTAGGGTATTTGAGTTT...

CDS

5 records

下载 CDS FASTA

LOC130991425
ATGGAGGAGAGGGTTGAGATTTATGCGAAGGAGAGTAGCAGAGAGGTGCTAGAGGTGATGGACACGCCAGAGAGGAGCAAGAACAGCCAGATCGCAGCGTCCATTAGCAAATTTGAGGATTCCCCGGTTTTCACCTTCCTCAACAGTCTTTCCCCTATCAAGCCGGTTAAATCCACACACATCACTCAGACGATCAACCCTCTTAGTTTCGCGTCCATTCCATCTGTCTTCACTTCGCCTCACGTTAGTTCTGTACGGGA...

Protein

5 records

下载 Protein FASTA

XP_057771624.1
MEERVEIYAKESSREVLEVMDTPERSKNSQIAASISKFEDSPVFTFLNSLSPIKPVKSTHITQTINPLSFASIPSVFTSPHVSSVRESRFLRRHQLSDPSKPEFSSDDGAKLDTNKANADASKQLDDQKESGDGDVAAEPSYDCSKFVVDFAKDYECASPNSNLRPGCGLEGKGMADYGCSSSALVQLTREPPQRGEVNIDGVNQNREAAGSCDWEHMISDTSELLVFESPVDRDSYSKSVDPGTSFYTGIKSDMQNLHL...

XP_057771625.1
MEERVEIYAKESSREVLEVMDTPERSKNSQIAASISKFEDSPVFTFLNSLSPIKPVKSTHITQTINPLSFASIPSVFTSPHVSSVRESRFLRRHQLSDPSKPEFSSDDGAKLDTNKANADASKQLDDQKESGDGDVAAEPSYDCSKFVVDFAKDYECASPNSNLRPGCGLEGKGMADYGCSSSALVQLTREPPQRGEVNIDGVNQNREAAGSCDWEHMISDTSELLVFESPVDRDSYSKSVDPGTSFYTGIKSDMQNLHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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