Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000235`

染色体: Chr07 坐标: 1524546-1530969 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000235`
名称	SmilChr07G000235
描述	pentatricopeptide repeat-containing protein At3g22690-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1524546 - 1530969 / `+`

ID 对照

NCBI Gene ID	`LOC130991434`
GeneID	`130991434`
locus_tag	`-`
NCBI Name	`LOC130991434`
原始查询	`SmilChr07G000235`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g22690-like
产物	pentatricopeptide repeat-containing protein At3g22690-like
Arabidopsis	`AT3G22690` (AT3G22690) LOW protein: PPR containing-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821840] identity=56.5; qcov=0.858; evalue=1.08e-75; confidence=high
Rice	`Os03g0821700` (OJ1754_E06.32) - identity=44; qcov=0.873; evalue=1.37e-63; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:130991434

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057771643.1`
2	Chloroplast	叶绿体	0.40000	`XP_057771643.1`
3	Nucleus	细胞核	0.00000	`XP_057771643.1`
4	Chromosome	染色体	0.00000	`XP_057771643.1`
5	Centromere	着丝粒	0.00000	`XP_057771643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1525120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,B68
`Chr7:1525125`	`TG`	`T`	1bp_deletion	frameshift_variant	51	A13,A16,A18,A19,A4,A8,B102,B105,B126,B13,B137,B15,B16,B22,B23,B24,B25,B34,B41,B50,B56,B57,B58,B59,B66,B75,B78,B80,B86,B89,B9,B96,C16,C19,C24,C25,C27,C36,C41,C47,C49,C55,C59,C62,C63,C75,C78,C82,C85,C87,D4
`Chr7:1525136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B68
`Chr7:1525137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr7:1525158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B99,D10,D7
`Chr7:1525160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:1525215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:1525225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C25,C35,C51,C79
`Chr7:1525279`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A6
`Chr7:1525279`	`TC`	`T`	1bp_deletion	CDS_variant	1	A6
`Chr7:1525293`	`C`	`T`	EMS_canonical_SNV	stop_gained	74	A13,A15,A16,A18,A19,A20,A24,A25,A4,A8,B102,B105,B112,B113,B118,B12,B120,B126,B13,B135,B136,B137,B14,B15,B16,B22,B23,B24,B25,B30,B34,B35,B36,B41,B50,B55,B56,B57,B58,B65,B66,B71,B75,B78,B80,B86,B89,B96,C15,C16,C19,C2,C24,C27,C36,C41,C47,C49,C54,C55,C59,C6,C60,C62,C63,C64,C66,C75,C78,C79,C82,C87,D2,D4
`Chr7:1525390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771643.1

268 aa

134

268

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

PPR_1

PPR

E_motif

PF01535 PPR 38-64 aa PF13041 PPR_2 62-110 aa PF13812 PPR_3 63-109 aa PF01535 PPR 66-95 aa PF13812 PPR_3 86-145 aa PF01535 PPR 100-130 aa PF12854 PPR_1 129-160 aa PF01535 PPR 135-160 aa PF20431 E_motif 180-244 aa

XP_057771644.1

268 aa

134

268

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

PPR_1

PPR

E_motif

XP_057771645.1

268 aa

134

268

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

PPR_1

PPR

E_motif

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771643.1`	Pfam	`PF01535`	PPR	Repeat	38	64	9.1e-26	89.0	PPR repeat
`XP_057771643.1`	Pfam	`PF13041`	PPR_2	Repeat	62	110	1.2e-21	77.2	PPR repeat family
`XP_057771643.1`	Pfam	`PF13812`	PPR_3	Repeat	63	109	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771643.1`	Pfam	`PF01535`	PPR	Repeat	66	95	9.1e-26	89.0	PPR repeat
`XP_057771643.1`	Pfam	`PF13812`	PPR_3	Repeat	86	145	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771643.1`	Pfam	`PF01535`	PPR	Repeat	100	130	9.1e-26	89.0	PPR repeat
`XP_057771643.1`	Pfam	`PF12854`	PPR_1	Repeat	129	160	4.1e-15	55.9	PPR repeat
`XP_057771643.1`	Pfam	`PF01535`	PPR	Repeat	135	160	9.1e-26	89.0	PPR repeat
`XP_057771643.1`	Pfam	`PF20431`	E_motif	Repeat	180	244	4.7e-12	46.7	E motif
`XP_057771644.1`	Pfam	`PF01535`	PPR	Repeat	38	64	9.1e-26	89.0	PPR repeat
`XP_057771644.1`	Pfam	`PF13041`	PPR_2	Repeat	62	110	1.2e-21	77.2	PPR repeat family
`XP_057771644.1`	Pfam	`PF13812`	PPR_3	Repeat	63	109	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771644.1`	Pfam	`PF01535`	PPR	Repeat	66	95	9.1e-26	89.0	PPR repeat
`XP_057771644.1`	Pfam	`PF13812`	PPR_3	Repeat	86	145	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771644.1`	Pfam	`PF01535`	PPR	Repeat	100	130	9.1e-26	89.0	PPR repeat
`XP_057771644.1`	Pfam	`PF12854`	PPR_1	Repeat	129	160	4.1e-15	55.9	PPR repeat
`XP_057771644.1`	Pfam	`PF01535`	PPR	Repeat	135	160	9.1e-26	89.0	PPR repeat
`XP_057771644.1`	Pfam	`PF20431`	E_motif	Repeat	180	244	4.7e-12	46.7	E motif
`XP_057771645.1`	Pfam	`PF01535`	PPR	Repeat	38	64	9.1e-26	89.0	PPR repeat
`XP_057771645.1`	Pfam	`PF13041`	PPR_2	Repeat	62	110	1.2e-21	77.2	PPR repeat family
`XP_057771645.1`	Pfam	`PF13812`	PPR_3	Repeat	63	109	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771645.1`	Pfam	`PF01535`	PPR	Repeat	66	95	9.1e-26	89.0	PPR repeat
`XP_057771645.1`	Pfam	`PF13812`	PPR_3	Repeat	86	145	1.7e-15	57.5	Pentatricopeptide repeat domain
`XP_057771645.1`	Pfam	`PF01535`	PPR	Repeat	100	130	9.1e-26	89.0	PPR repeat
`XP_057771645.1`	Pfam	`PF12854`	PPR_1	Repeat	129	160	4.1e-15	55.9	PPR repeat
`XP_057771645.1`	Pfam	`PF01535`	PPR	Repeat	135	160	9.1e-26	89.0	PPR repeat
`XP_057771645.1`	Pfam	`PF20431`	E_motif	Repeat	180	244	4.7e-12	46.7	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915661.1
AGTCCCATGGCAAAAACCCAGTAAAAAACACTAAAAAATCCAATTAAAGGTTCTCGTATTCAGATTGTTGCTCCTCCTGAATCTGTTTCGCCGAGGCCACAGCAGAATCGCTGCACCATTTTAACTCGATTAATTGGAGGGTTGAGATTTCTCCAATGCCGGCGGGGATTTCCTCTAGCTTCTCACAAACTCCTATAAAGAGATGGCGGAGTCTAGGGAAGTTGGTTTCATCAGCTCTCCAACGCACCAGGTCTAAATAA...

XM_057915660.1
AGTCCCATGGCAAAAACCCAGTAAAAAACACTAAAAAATCCAATTAAAGGTTCTCGTATTCAGATTGTTGCTCCTCCTGAATCTGTTTCGCCGAGGCCACAGCAGAATCGCTGCACCATTTTAACTCGATTAATTGGAGGGTTGAGATTTCTCCAATGCCGGCGGGGATTTCCTCTAGCTTCTCACAAACTCCTATAAAGAGATGGCGGAGTCTAGGGAAGTTGGTTTCATCAGCTCTCCAACGCACCAGGTCTAAATAA...

CDS

3 records

下载 CDS FASTA

LOC130991434
ATGAATCCCAGCTTAATGTTTGGAGTTTGTGAAGATGACTCAGATCAACTACTTCACTCTTCCCTGATGAGCCTTCAATTGGATACTCAGATCAACACACGCCTCTGCATTGCTCTCGTCGACATGTTTGTTAGGCGCGGGGACCCACGGAGCGCGATGGAGGTGTTCTGGTCGATGAAGGAGAGAGACGTATCCGCATGGACTACAGCAATCGGAGCGATGGCAATGGAGGGGAACGGGGAACGAGCCCTCGAGCTTTT...

Protein

3 records

下载 Protein FASTA

XP_057771643.1
MNPSLMFGVCEDDSDQLLHSSLMSLQLDTQINTRLCIALVDMFVRRGDPRSAMEVFWSMKERDVSAWTTAIGAMAMEGNGERALELFHEMVRRGIAPDQVAFSGVLTACSHAGLVDEGMLVFNSMKEYGIVPHVVHYGCVVDLLGRAGLLDEALEFIDAMPLEANAAIWGAFLSACRKHGNEKMASRAAKMMSECSSDGGDHTGIHVLLSNIYASAVLWSNVARVRTRMKERGMRKTPCSSAIEVGGVVREFTSGDESAC...

XP_057771644.1
MNPSLMFGVCEDDSDQLLHSSLMSLQLDTQINTRLCIALVDMFVRRGDPRSAMEVFWSMKERDVSAWTTAIGAMAMEGNGERALELFHEMVRRGIAPDQVAFSGVLTACSHAGLVDEGMLVFNSMKEYGIVPHVVHYGCVVDLLGRAGLLDEALEFIDAMPLEANAAIWGAFLSACRKHGNEKMASRAAKMMSECSSDGGDHTGIHVLLSNIYASAVLWSNVARVRTRMKERGMRKTPCSSAIEVGGVVREFTSGDESAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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