当前解析结果
SmilChr07G000236| 统一新 Gene ID | SmilChr07G000236 |
|---|---|
| 名称 | SmilChr07G000236 |
| 描述 | uncharacterized SmilChr07G000236 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1528925 - 1530736 / - |
| NCBI Gene ID | LOC130993019 |
|---|---|
| GeneID | 130993019 |
| locus_tag | - |
| NCBI Name | LOC130993019 |
| 原始查询 | SmilChr07G000236 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0566300; species=rice; confidence=low |
| 产物 | hit=Os02g0566300; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os02g0566300- identity=26.9; qcov=0.735; evalue=7.18e-45; confidence=low |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF02160 (Peptidase_A3); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993019 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057773723.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057773723.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057773723.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773723.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773723.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1528953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr7:1528986 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr7:1528986 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr7:1529114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:1529319 |
C |
T |
EMS_canonical_SNV | stop_gained | 51 | A10,A15,A25,A3,A8,B100,B103,B113,B117,B119,B133,B137,B138,B139,B16,B24,B3,B32,B36,B37,B41,B44,B47,B56,B6,B67,B7,B72,B73,B80,B82,B85,B96,B99,C1,C13,C23,C25,C3,C34,C4,C43,C44,C67,C73,C79,C8,C84,D1,D10,D4 |
Chr7:1529340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B132 |
Chr7:1529359 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C82 |
Chr7:1529359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:1529374 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A13 |
Chr7:1529374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:1529398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:1529480 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A18,B133,B41,C57 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773723.1PF03732
PEG10_N-capsid 121-195 aa
PF19259
Ty3_capsid 143-283 aa
PF13650
Asp_protease_2 414-475 aa
PF13975
gag-asp_proteas 414-502 aa
PF08284
RVP_2 416-509 aa
PF02160
Peptidase_A3 420-534 aa
PF30863
PRO_PEG10-RTL1 423-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773723.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 121 | 195 | 4.6e-11 | 43.6 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057773723.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 143 | 283 | 2.8e-18 | 66.8 | Ty3 transposon capsid-like protein |
XP_057773723.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 414 | 475 | 3.8e-08 | 34.6 | Aspartyl protease |
XP_057773723.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 414 | 502 | 1.8e-08 | 35.5 | gag-polyprotein putative aspartyl protease |
XP_057773723.1 |
Pfam | PF08284 |
RVP_2 | Domain | 416 | 509 | 4.9e-09 | 36.8 | Retroviral aspartyl protease |
XP_057773723.1 |
Pfam | PF02160 |
Peptidase_A3 | Family | 420 | 534 | 1.1e-05 | 25.8 | Cauliflower mosaic virus peptidase (A3) |
XP_057773723.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 423 | 517 | 1.4e-09 | 39.1 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。