当前解析结果
SmilChr07G000240| 统一新 Gene ID | SmilChr07G000240 |
|---|---|
| 名称 | SmilChr07G000240 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1542027 - 1544270 / - |
| NCBI Gene ID | LOC130993020 |
|---|---|
| GeneID | 130993020 |
| locus_tag | - |
| NCBI Name | LOC130993020 |
| 原始查询 | SmilChr07G000240 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G10920 (LOV1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:837635] identity=32.8; qcov=0.616; evalue=1.15e-60; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=31.5; qcov=0.641; evalue=9.54e-59; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057773724.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057773724.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057773724.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773724.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773724.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1542028 |
TAG |
* |
2bp_deletion | CDS_variant | 1 | B101 |
Chr7:1542035 |
T |
TA |
1bp_insertion | frameshift_variant | 32 | A14,B104,B135,B136,B139,B14,B42,B43,B49,B55,B6,B67,C11,C15,C18,C26,C29,C3,C33,C41,C46,C60,C67,C69,C70,C71,C73,C77,C85,C86,D1,D3 |
Chr7:1542037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,C39,C53,C74 |
Chr7:1542039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1542061 |
T |
TTG |
2bp_insertion | frameshift_variant | 1 | B13 |
Chr7:1542061 |
T |
TTG |
2bp_insertion | CDS_variant | 1 | B13 |
Chr7:1542066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,C26 |
Chr7:1542073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,D6 |
Chr7:1542077 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A15 |
Chr7:1542077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr7:1542107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr7:1542115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B114,B13,B130,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773724.1PF00931
NB-ARC 59-185 aa
PF23559
WHD_DRP 269-340 aa
PF23598
LRR_14 389-619 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773724.1 |
Pfam | PF00931 |
NB-ARC | Domain | 59 | 185 | 6.7e-30 | 104.6 | NB-ARC domain |
XP_057773724.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 269 | 340 | 7e-18 | 65.1 | Disease resistance protein Winged helix domain |
XP_057773724.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 389 | 619 | 1.8e-15 | 57.3 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。