当前解析结果
SmilChr07G000243| 统一新 Gene ID | SmilChr07G000243 |
|---|---|
| 名称 | SmilChr07G000243 |
| 描述 | probable RNA helicase SDE3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1570883 - 1577181 / + |
| NCBI Gene ID | LOC130991440 |
|---|---|
| GeneID | 130991440 |
| locus_tag | - |
| NCBI Name | LOC130991440 |
| 原始查询 | SmilChr07G000243 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable RNA helicase SDE3 |
| 产物 | probable RNA helicase SDE3 |
| Arabidopsis | AT1G05460 (SDE3)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837047] identity=55.5; qcov=0.856; evalue=0; confidence=high |
| Rice | Os03g0160400- identity=52; qcov=0.911; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0016887 (ATP hydrolysis activity); GO:0032574 (5'-3' RNA helicase activity) |
| KEGG | - |
| Pfam | PF04851 (ResIII); PF13086 (AAA_11); PF13087 (AAA_12); PF13245 (AAA_19); PF13604 (AAA_30); PF21634 (MOV-10_beta-barrel) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991440 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771655.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057771655.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057771655.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057771655.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057771655.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1572239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B120,B34,C35,D2 |
Chr7:1572301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr7:1572432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:1572456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr7:1572533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B25,C42,C71,D8 |
Chr7:1572561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:1572596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B131,B136,B61,C9 |
Chr7:1572756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr7:1572773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:1572804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B87,B93,B94,C33,C77 |
Chr7:1572843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr7:1572892 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771655.1PF21634
MOV-10_beta-barrel 274-357 aa
PF04851
ResIII 404-567 aa
PF13086
AAA_11 405-490 aa
PF13604
AAA_30 405-589 aa
PF13245
AAA_19 423-589 aa
PF13086
AAA_11 521-592 aa
PF13087
AAA_12 601-804 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771655.1 |
Pfam | PF21634 |
MOV-10_beta-barrel | Domain | 274 | 357 | 4.6e-27 | 94.0 | Helicase MOV-10, beta-barrel domain |
XP_057771655.1 |
Pfam | PF04851 |
ResIII | Family | 404 | 567 | 4.3e-09 | 37.2 | Type III restriction enzyme, res subunit |
XP_057771655.1 |
Pfam | PF13086 |
AAA_11 | Domain | 405 | 490 | 2.6e-33 | 116.6 | AAA domain |
XP_057771655.1 |
Pfam | PF13604 |
AAA_30 | Domain | 405 | 589 | 3.4e-11 | 44.0 | AAA domain |
XP_057771655.1 |
Pfam | PF13245 |
AAA_19 | Domain | 423 | 589 | 4.4e-08 | 34.1 | AAA domain |
XP_057771655.1 |
Pfam | PF13086 |
AAA_11 | Domain | 521 | 592 | 2.6e-33 | 116.6 | AAA domain |
XP_057771655.1 |
Pfam | PF13087 |
AAA_12 | Domain | 601 | 804 | 6.5e-49 | 166.9 | AAA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。