Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000245`

染色体: Chr07 坐标: 1579872-1581780 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000245`
名称	SmilChr07G000245
描述	non-specific lipid transfer protein GPI-anchored 21-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1579872 - 1581780 / `-`

ID 对照

NCBI Gene ID	`LOC130991441`
GeneID	`130991441`
locus_tag	`-`
NCBI Name	`LOC130991441`
原始查询	`SmilChr07G000245`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	non-specific lipid transfer protein GPI-anchored 21-like
产物	non-specific lipid transfer protein GPI-anchored 21-like
Arabidopsis	`AT1G05450` (AT1G05450) Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837046] identity=48.1; qcov=0.581; evalue=7.19e-25; confidence=medium
Rice	`Os03g0192600` (OsLTPG3) - identity=40; qcov=0.349; evalue=6.2e-08; confidence=low
GO	-
KEGG	-
Pfam	PF00234 (Tryp_alpha_amyl); PF14368 (LTP_2)
InterPro	-
eggNOG	-
NR	GeneID:130991441

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771656.1`
2	Nucleus	细胞核	0.00000	`XP_057771656.1`
3	Chromosome	染色体	0.00000	`XP_057771656.1`
4	Centromere	着丝粒	0.00000	`XP_057771656.1`
5	Chromatin	染色质	0.00000	`XP_057771656.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1580000`	`C`	`CTA`	2bp_insertion	frameshift_variant	1	C52
`Chr7:1580000`	`C`	`CTA`	2bp_insertion	CDS_variant	1	C52
`Chr7:1580004`	`T`	`TAG`	2bp_insertion	frameshift_variant	46	A13,A16,A19,A2,A6,A8,B1,B100,B117,B119,B123,B126,B127,B130,B135,B139,B15,B23,B33,B45,B46,B48,B49,B5,B53,B55,B64,B7,B75,B78,B79,B84,B89,B98,C2,C31,C33,C36,C47,C59,C63,C70,C84,C87,D1,D4
`Chr7:1580105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr7:1580140`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B108
`Chr7:1580140`	`GC`	`G`	1bp_deletion	CDS_variant	1	B108
`Chr7:1580166`	`T`	`TC`	1bp_insertion	stop_gained,frameshift_variant	1	B60
`Chr7:1580166`	`T`	`TC`	1bp_insertion	CDS_variant	1	B60
`Chr7:1580201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:1580221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:1580222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B93,D10
`Chr7:1581056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771656.1

195 aa

195

LTP_2

Tryp_alpha_amyl

PF14368 LTP_2 19-111 aa PF00234 Tryp_alpha_amyl 36-105 aa

XP_057771657.1

186 aa

186

LTP_2

Tryp_alpha_amyl

PF14368 LTP_2 19-111 aa PF00234 Tryp_alpha_amyl 36-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771656.1`	Pfam	`PF14368`	LTP_2	Family	19	111	9.6e-17	61.7	Probable lipid transfer
`XP_057771656.1`	Pfam	`PF00234`	Tryp_alpha_amyl	Domain	36	105	1.5e-07	32.3	Protease inhibitor/seed storage/LTP family
`XP_057771657.1`	Pfam	`PF14368`	LTP_2	Family	19	111	8.7e-17	61.8	Probable lipid transfer
`XP_057771657.1`	Pfam	`PF00234`	Tryp_alpha_amyl	Domain	36	105	6.8e-08	33.4	Protease inhibitor/seed storage/LTP family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915673.1
GCTTCAAAACCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATATGTATATTGAAATCCATTGACACACATAAAGCCAAGCCAATGGCAAAATTGAAATCATTTGAATGCCTATTTTCAGGCTTGTGTTTAGTTTCAACAGCAGTAGTTGTGCAAGTGAGCAGCCAATCAAGCACGATTTGCAGCGCGGCGATGACGCGAAGCTTCAGCTCCTGCGTCAGCTACCTCACGACGGGCTCCGGCGCGTCGTC...

XM_057915674.1
ACACATAAAGCCAAGCCAATGGCAAAATTGAAATCATTTGAATGCCTATTTTCAGGCTTGTGTTTAGTTTCAACAGCAGTAGTTGTGCAAGTGAGCAGCCAATCAAGCACGATTTGCAGCGCGGCGATGACGCGAAGCTTCAGCTCCTGCGTCAGCTACCTCACGACGGGCTCCGGCGCGTCGTCTCCCACCGAAGCTTGCTGCAGCTCGCTCAAAAACCTCATGAGCAACGGCCAAGACTGCCTCTGCCTCATCGTCAC...

CDS

2 records

下载 CDS FASTA

LOC130991441
ATGGCAAAATTGAAATCATTTGAATGCCTATTTTCAGGCTTGTGTTTAGTTTCAACAGCAGTAGTTGTGCAAGTGAGCAGCCAATCAAGCACGATTTGCAGCGCGGCGATGACGCGAAGCTTCAGCTCCTGCGTCAGCTACCTCACGACGGGCTCCGGCGCGTCGTCTCCCACCGAAGCTTGCTGCAGCTCGCTCAAAAACCTCATGAGCAACGGCCAAGACTGCCTCTGCCTCATCGTCACCGGCGGAGCTCCTTTCCA...

Protein

2 records

下载 Protein FASTA

XP_057771656.1
MAKLKSFECLFSGLCLVSTAVVVQVSSQSSTICSAAMTRSFSSCVSYLTTGSGASSPTEACCSSLKNLMSNGQDCLCLIVTGGAPFQVPLNRPLAMSLPRACKMPGVAVECRATASPLSPPDEDDGAPLSSPPSPRGDDDYEELSPASLPPESDVVPEFTPPGMRPTLLPSAALSCHVDLPSLFIMLGVFLFKCY

XP_057771657.1
MAKLKSFECLFSGLCLVSTAVVVQVSSQSSTICSAAMTRSFSSCVSYLTTGSGASSPTEACCSSLKNLMSNGQDCLCLIVTGGAPFQVPLNRPLAMSLPRACKMPGVAVECRDEDDGAPLSSPPSPRGDDDYEELSPASLPPESDVVPEFTPPGMRPTLLPSAALSCHVDLPSLFIMLGVFLFKCY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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