当前解析结果
SmilChr07G000255| 统一新 Gene ID | SmilChr07G000255 |
|---|---|
| 名称 | SmilChr07G000255 |
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1624168 - 1628047 / + |
| NCBI Gene ID | LOC130991450 |
|---|---|
| GeneID | 130991450 |
| locus_tag | - |
| NCBI Name | LOC130991450 |
| 原始查询 | SmilChr07G000255 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 产物 | folate-biopterin transporter 1%2C chloroplastic-like |
| Arabidopsis | AT2G32040 (AT2G32040)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817764] identity=74.5; qcov=1.03; evalue=0; confidence=high |
| Rice | Os07g0172900 (P0496D04.34-1)- identity=75.1; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF03092 (BT1); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991450 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057771671.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057771671.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771671.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771671.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771671.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1625233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B128,B56,B88,B96 |
Chr7:1625340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B51,B76 |
Chr7:1625395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C15 |
Chr7:1625404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:1626176 |
CT |
C |
1bp_deletion | frameshift_variant | 6 | B4,B54,C12,C15,C21,C42 |
Chr7:1626188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B4,B54,C15,C21,C42 |
Chr7:1626835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,C32,C68 |
Chr7:1626976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:1627143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:1627257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:1627563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr7:1627587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771671.1PF03092
BT1 72-486 aa
PF07690
MFS_1 78-432 aa
XP_057771672.1PF03092
BT1 72-486 aa
PF07690
MFS_1 78-432 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771671.1 |
Pfam | PF03092 |
BT1 | Family | 72 | 486 | 1.2e-146 | 489.6 | BT1 family |
XP_057771671.1 |
Pfam | PF07690 |
MFS_1 | Family | 78 | 432 | 4.3e-14 | 52.9 | Major Facilitator Superfamily |
XP_057771672.1 |
Pfam | PF03092 |
BT1 | Family | 72 | 486 | 1.2e-146 | 489.6 | BT1 family |
XP_057771672.1 |
Pfam | PF07690 |
MFS_1 | Family | 78 | 432 | 4.3e-14 | 52.9 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。