当前解析结果
SmilChr07G000260| 统一新 Gene ID | SmilChr07G000260 |
|---|---|
| 名称 | SmilChr07G000260 |
| 描述 | uncharacterized SmilChr07G000260 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1672969 - 1673668 / + |
| NCBI Gene ID | LOC130991457 |
|---|---|
| GeneID | 130991457 |
| locus_tag | - |
| NCBI Name | LOC130991457 |
| 原始查询 | SmilChr07G000260 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock protein [Source:NCBI gene (formerly Entrezgene);Acc:821824]; symbol=AT3G22530; hit=AT3G22530; species=arabidopsis; confidence=medium |
| 产物 | heat shock protein [Source:NCBI gene (formerly Entrezgene);Acc:821824]; symbol=AT3G22530; hit=AT3G22530; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G22530 (AT3G22530)heat shock protein [Source:NCBI gene (formerly Entrezgene);Acc:821824] identity=55.8; qcov=0.795; evalue=3.17e-39; confidence=medium |
| Rice | Os07g0173100- identity=57.8; qcov=0.768; evalue=1.61e-33; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991457 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771678.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057771678.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057771678.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771678.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771678.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1673127 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B3,B4,C12,C15,C21,C42 |
Chr7:1673136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr7:1673150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B51,B76 |
Chr7:1673204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,B4,C21,C42 |
Chr7:1673300 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr7:1673300 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B35 |
Chr7:1673303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:1673325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B10,B139 |
Chr7:1673339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B38,B39,C24 |
Chr7:1673447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C11,C64,C66,C69 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。