当前解析结果
SmilChr07G000263| 统一新 Gene ID | SmilChr07G000263 |
|---|---|
| 名称 | SmilChr07G000263 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1683730 - 1710809 / + |
| NCBI Gene ID | LOC130991458 |
|---|---|
| GeneID | 130991458 |
| locus_tag | - |
| NCBI Name | LOC130991458 |
| 原始查询 | SmilChr07G000263 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=29.3; qcov=0.984; evalue=3.01e-76; confidence=low |
| Rice | Os07g0186500- identity=30.3; qcov=0.937; evalue=2.39e-81; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991458 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057771679.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057771679.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057771679.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771680.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771680.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1683893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr7:1683905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C23,C5 |
Chr7:1683906 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C42 |
Chr7:1683906 |
T |
TC |
1bp_insertion | CDS_variant | 1 | C42 |
Chr7:1683909 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C42 |
Chr7:1683909 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C42 |
Chr7:1683923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C66 |
Chr7:1683938 |
CAA |
C |
2bp_deletion | frameshift_variant | 4 | B10,B13,B68,C39 |
Chr7:1683938 |
CAA |
C |
2bp_deletion | CDS_variant | 4 | B10,B13,B68,C39 |
Chr7:1683991 |
G |
GC |
1bp_insertion | frameshift_variant | 2 | A3,C18 |
Chr7:1683991 |
G |
GC |
1bp_insertion | CDS_variant | 2 | A3,C18 |
Chr7:1684119 |
GC |
* |
1bp_deletion | CDS_variant | 4 | A4,A5,B104,C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771679.1PF00931
NB-ARC 237-405 aa
PF23559
WHD_DRP 489-560 aa
PF23598
LRR_14 632-925 aa
XP_057771680.1PF00931
NB-ARC 147-319 aa
PF23559
WHD_DRP 402-475 aa
PF23598
LRR_14 540-836 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771679.1 |
Pfam | PF00931 |
NB-ARC | Domain | 237 | 405 | 9e-43 | 146.6 | NB-ARC domain |
XP_057771679.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 489 | 560 | 3.9e-21 | 75.6 | Disease resistance protein Winged helix domain |
XP_057771679.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 632 | 925 | 1.2e-14 | 54.6 | Leucine-rich repeat region |
XP_057771680.1 |
Pfam | PF00931 |
NB-ARC | Domain | 147 | 319 | 2e-41 | 142.2 | NB-ARC domain |
XP_057771680.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 402 | 475 | 7.7e-21 | 74.6 | Disease resistance protein Winged helix domain |
XP_057771680.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 836 | 4.7e-15 | 55.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。