当前解析结果
SmilChr07G000267| 统一新 Gene ID | SmilChr07G000267 |
|---|---|
| 名称 | SmilChr07G000267 |
| 描述 | late blight resistance protein R1-A-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1725440 - 1728517 / + |
| NCBI Gene ID | LOC130991463 |
|---|---|
| GeneID | 130991463 |
| locus_tag | - |
| NCBI Name | LOC130991463 |
| 原始查询 | SmilChr07G000267 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | late blight resistance protein R1-A-like |
| 产物 | late blight resistance protein R1-A-like |
| Arabidopsis | AT1G10920 (LOV1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:837635] identity=33.7; qcov=0.618; evalue=2.84e-55; confidence=low |
| Rice | Os07g0186500- identity=33; qcov=0.712; evalue=3.27e-59; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991463 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057771686.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057771686.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057771686.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057771686.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771686.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1726271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,C10,C74 |
Chr7:1726287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B24,C45,C53,D6 |
Chr7:1726290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B24 |
Chr7:1726296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B22,B5,B61,C72 |
Chr7:1726298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,C41,C79,D7 |
Chr7:1726326 |
AT |
A |
1bp_deletion | frameshift_variant | 26 | A11,A16,A19,A6,A7,B106,B113,B114,B135,B33,B56,B60,B74,B89,B93,B96,C14,C24,C27,C35,C40,C49,C59,C76,D2,D6 |
Chr7:1726381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,C25 |
Chr7:1726393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr7:1726449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C36 |
Chr7:1726477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B129,B24,B36,B82,C32 |
Chr7:1726516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B69,B8 |
Chr7:1726540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B49,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771686.1PF00931
NB-ARC 17-114 aa
PF23559
WHD_DRP 197-268 aa
PF23598
LRR_14 328-658 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771686.1 |
Pfam | PF00931 |
NB-ARC | Domain | 17 | 114 | 6.2e-24 | 85.2 | NB-ARC domain |
XP_057771686.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 197 | 268 | 2.6e-21 | 76.1 | Disease resistance protein Winged helix domain |
XP_057771686.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 328 | 658 | 2.3e-15 | 56.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。