当前解析结果
SmilChr07G000275| 统一新 Gene ID | SmilChr07G000275 |
|---|---|
| 名称 | SmilChr07G000275 |
| 描述 | lactoylglutathione lyase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1786960 - 1789538 / + |
| NCBI Gene ID | LOC130991468 |
|---|---|
| GeneID | 130991468 |
| locus_tag | - |
| NCBI Name | LOC130991468 |
| 原始查询 | SmilChr07G000275 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lactoylglutathione lyase-like |
| 产物 | lactoylglutathione lyase-like |
| Arabidopsis | AT2G32090 (AT2G32090)Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:817769] identity=59.9; qcov=0.917; evalue=7.02e-58; confidence=high |
| Rice | Os03g0659300 (OsGLYI4)- identity=51.5; qcov=0.917; evalue=7.28e-39; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00903 (Glyoxalase); PF13669 (Glyoxalase_4); PF18029 (Glyoxalase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991468 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057771693.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057771694.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771693.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771693.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771693.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1787202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,D11 |
Chr7:1787851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,B46,B98 |
Chr7:1787925 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B44,B93 |
Chr7:1787925 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B44,B93 |
Chr7:1787956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,B93 |
Chr7:1787989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B34,B54,C35 |
Chr7:1788025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C39 |
Chr7:1789133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:1789141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C74,D9 |
Chr7:1789171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1789200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B65,B75,B78,C1 |
Chr7:1789270 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B2,B51,C39,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771693.1PF00903
Glyoxalase 11-133 aa
PF13669
Glyoxalase_4 12-126 aa
XP_057771694.1PF00903
Glyoxalase 11-137 aa
PF13669
Glyoxalase_4 12-126 aa
PF18029
Glyoxalase_6 17-137 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771693.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 11 | 133 | 1.9e-11 | 45.1 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057771693.1 |
Pfam | PF13669 |
Glyoxalase_4 | Family | 12 | 126 | 5.8e-09 | 36.9 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057771694.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 11 | 137 | 3.8e-13 | 50.6 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057771694.1 |
Pfam | PF13669 |
Glyoxalase_4 | Family | 12 | 126 | 5.4e-09 | 37.0 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057771694.1 |
Pfam | PF18029 |
Glyoxalase_6 | Domain | 17 | 137 | 3.4e-05 | 25.2 | Glyoxalase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。