当前解析结果
SmilChr07G000284| 统一新 Gene ID | SmilChr07G000284 |
|---|---|
| 名称 | SmilChr07G000284 |
| 描述 | uncharacterized SmilChr07G000284 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1846457 - 1850525 / + |
| NCBI Gene ID | LOC130991480 |
|---|---|
| GeneID | 130991480 |
| locus_tag | - |
| NCBI Name | LOC130991480 |
| 原始查询 | SmilChr07G000284 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151]; symbol=AT4G14930; hit=AT4G14930; species=arabidopsis; confidence=high |
| 产物 | Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151]; symbol=AT4G14930; hit=AT4G14930; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G14930 (AT4G14930)Survival protein SurE-like phosphatase/nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:827151] identity=52.3; qcov=0.987; evalue=4.4e-112; confidence=high |
| Rice | Os07g0204500- identity=47.5; qcov=0.965; evalue=1.07e-87; confidence=high |
| GO | GO:0005829 (cytosol); GO:0008252 (nucleotidase activity) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00240 (Pyrimidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01975 (SurE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771719.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057771719.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057771719.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771719.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771719.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1846761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr7:1848154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C10 |
Chr7:1849684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr7:1850146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,A8 |
Chr7:1850169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,C15 |
Chr7:1850266 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B74 |
Chr7:1850266 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771719.1PF01975
SurE 14-206 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771719.1 |
Pfam | PF01975 |
SurE | Domain | 14 | 206 | 3.2e-52 | 177.8 | Survival protein SurE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。