Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000285`

染色体: Chr07 坐标: 1851554-1854430 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000285`
名称	SmilChr07G000285
描述	GPI mannosyltransferase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1851554 - 1854430 / `+`

ID 对照

NCBI Gene ID	`LOC130991479`
GeneID	`130991479`
locus_tag	`-`
NCBI Name	`LOC130991479`
原始查询	`SmilChr07G000285`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GPI mannosyltransferase 1-like
产物	GPI mannosyltransferase 1-like
Arabidopsis	`AT5G22130` (PNT1) mannosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832274] identity=67.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0670200` - identity=63.5; qcov=0.974; evalue=0; confidence=high
GO	GO:0004376 (GPI mannosyltransferase activity); GO:0006506 (GPI anchor biosynthetic process); GO:0016020 (membrane); GO:0051751 (alpha-1,4-mannosyltransferase activity); GO:1990529 (glycosylphosphatidylinositol-mannosyltransferase I complex)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05007 (Mannosyl_trans); PF06728 (PIG-U)
InterPro	-
eggNOG	-
NR	GeneID:130991479

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057771718.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057771718.1`
3	Nucleus	细胞核	0.00000	`XP_057771718.1`
4	Chromosome	染色体	0.00000	`XP_057771718.1`
5	Centromere	着丝粒	0.00000	`XP_057771718.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1852076`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr7:1852205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr7:1852288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B4,C15,C26,C39
`Chr7:1852303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B20,B40,C25,C68,D1
`Chr7:1852895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B37,C65
`Chr7:1852896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr7:1852907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B120,B54
`Chr7:1853391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B18,B24,B97,C35
`Chr7:1853433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,C26,C39
`Chr7:1853474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B97
`Chr7:1853482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B81,C45
`Chr7:1853486`	`T`	`TCA`	2bp_insertion	frameshift_variant	2	B24,B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771718.1

425 aa

212

425

PIG-U

Mannosyl_trans

PF06728 PIG-U 43-371 aa PF05007 Mannosyl_trans 128-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771718.1`	Pfam	`PF06728`	PIG-U	Family	43	371	3.7e-12	46.8	GPI transamidase subunit PIG-U
`XP_057771718.1`	Pfam	`PF05007`	Mannosyl_trans	Family	128	405	5e-67	227.2	Mannosyltransferase (PIG-M)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915735.1
ATCCGATTATTTTTATCCTGATTTTTGGCAAAAAATGAGATGCCCCCGGCGCCATTTTCGAGGTGTCTTTGTGTGCCCTAGCAAGATTATTTCTGCCTCCATCATTCTCTTTTTCCTCTGTCGCGATTACCCCTCATCTCCTCGCCATCGCCTGCCCGTCTTTTGAATCGATCGCCGCCGTCGCTTCAGTCAGAATCCGGCGAAGTTGCGTTACATTTGCGAGAGTTCGCTTCAGTCAGAATCGGGCCCTTATATTCATA...

CDS

1 records

下载 CDS FASTA

LOC130991479
ATGGCGGAGATAGGTTTCCGATCCGTGCTTCTCATCTCAGCAGTATTTCGCGTGGTTTTGATTCTGTACGGCGAGTGGCAAGATGCTCACATGGACGTCAGATACACTGATATTGACTACTTCGTCTTCTCCGACGCCGCGGCATTAATGGCTTCTGGAAAATCGCCGTATGAGAGATCGACGTATCGGTATTCGCCGTTGATTGCTTTCCTTCTGATGCCTAATTCATTCCTGCATCGGTCGTGGGGAAAATTCATGTT...

Protein

1 records

下载 Protein FASTA

XP_057771718.1
MAEIGFRSVLLISAVFRVVLILYGEWQDAHMDVRYTDIDYFVFSDAAALMASGKSPYERSTYRYSPLIAFLLMPNSFLHRSWGKFMFSASDLLVGLLIHRILKLRGVPEKLSTYSAMVWLFNPFTFTIGTRGNCEPVICSMILWILICLMKDNLLQAAFWYGLVVHLRIYPIIYALPIIILLDPLYFQPGRKPALVHWSFRTSKSSCDSSNAEIIGFQYIWNFFRSMITWRRIVFGVLSGSTFLILTGFSFYLYGWDFLH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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