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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000286

染色体: Chr07 坐标: 1855620-1860355 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000286
名称SmilChr07G000286
描述pentatricopeptide repeat-containing protein At3g09040, mitochondrial
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向1855620 - 1860355 / -

ID 对照

NCBI Gene IDLOC130991478
GeneID130991478
locus_tag-
NCBI NameLOC130991478
原始查询SmilChr07G000286

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g09040, mitochondrial
产物pentatricopeptide repeat-containing protein At3g09040%2C mitochondrial
ArabidopsisAT3G09040 (AT3G09040)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820057]
identity=52.9; qcov=0.943; evalue=0; confidence=high
RiceOs04g0514500
-
identity=40.7; qcov=0.925; evalue=0; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:130991478

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057771716.1
2 Chloroplast 叶绿体 0.20000 XP_057771716.1
3 Nucleus 细胞核 0.00000 XP_057771716.1
4 Chromosome 染色体 0.00000 XP_057771716.1
5 Centromere 着丝粒 0.00000 XP_057771716.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:1857233 G A EMS_canonical_SNV CDS_variant 1 B74
Chr7:1857276 C T EMS_canonical_SNV CDS_variant 1 B85
Chr7:1857384 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:1857397 C T EMS_canonical_SNV CDS_variant 5 B138,C68,C8,C82,D10
Chr7:1857414 G A EMS_canonical_SNV stop_gained 1 D10
Chr7:1857414 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:1857613 CG C 1bp_deletion frameshift_variant 12 A5,B1,B101,B108,B34,B45,B46,B6,B64,B83,C59,C67
Chr7:1857623 C T EMS_canonical_SNV CDS_variant 5 B114,B90,B92,C2,C55
Chr7:1857626 C T EMS_canonical_SNV CDS_variant 5 B75,B80,B89,C51,C72
Chr7:1857652 AG A 1bp_deletion frameshift_variant 5 C23,C32,C37,C68,C82
Chr7:1857652 AG A 1bp_deletion CDS_variant 5 C23,C32,C37,C68,C82
Chr7:1857655 AAG A 2bp_deletion frameshift_variant 1 C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771716.1
986 aa
N
1
493
986
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
C
PF12854 PPR_1 227-257 aa PF13041 PPR_2 228-266 aa PF01535 PPR 231-260 aa PF13041 PPR_2 294-341 aa PF13812 PPR_3 294-341 aa PF01535 PPR 297-327 aa PF13041 PPR_2 396-443 aa PF01535 PPR 398-428 aa PF01535 PPR 471-496 aa PF13041 PPR_2 497-544 aa PF01535 PPR 499-529 aa PF01535 PPR 572-599 aa PF01535 PPR 702-730 aa PF01535 PPR 775-800 aa PF13812 PPR_3 801-848 aa PF13041 PPR_2 801-849 aa PF01535 PPR 805-832 aa PF01535 PPR 839-865 aa PF01535 PPR 877-900 aa PF20431 E_motif 924-980 aa
XP_057771717.1
892 aa
N
1
446
892
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
PPR
C
PF12854 PPR_1 227-257 aa PF13041 PPR_2 228-266 aa PF01535 PPR 231-260 aa PF13041 PPR_2 294-341 aa PF13812 PPR_3 294-341 aa PF01535 PPR 297-327 aa PF01535 PPR 370-395 aa PF13041 PPR_2 396-443 aa PF01535 PPR 398-428 aa PF01535 PPR 471-496 aa PF13041 PPR_2 497-544 aa PF01535 PPR 499-529 aa PF01535 PPR 572-599 aa PF01535 PPR 702-730 aa PF01535 PPR 775-800 aa PF13812 PPR_3 801-848 aa PF13041 PPR_2 801-849 aa PF01535 PPR 805-832 aa PF01535 PPR 839-865 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771716.1 Pfam PF12854 PPR_1 Repeat 227 257 2.4e-52 175.1 PPR repeat
XP_057771716.1 Pfam PF13041 PPR_2 Repeat 228 266 1.1e-104 343.1 PPR repeat family
XP_057771716.1 Pfam PF01535 PPR Repeat 231 260 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF13041 PPR_2 Repeat 294 341 1.1e-104 343.1 PPR repeat family
XP_057771716.1 Pfam PF13812 PPR_3 Repeat 294 341 5.1e-32 110.5 Pentatricopeptide repeat domain
XP_057771716.1 Pfam PF01535 PPR Repeat 297 327 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF13041 PPR_2 Repeat 396 443 1.1e-104 343.1 PPR repeat family
XP_057771716.1 Pfam PF01535 PPR Repeat 398 428 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 471 496 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF13041 PPR_2 Repeat 497 544 1.1e-104 343.1 PPR repeat family
XP_057771716.1 Pfam PF01535 PPR Repeat 499 529 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 572 599 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 702 730 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 775 800 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF13812 PPR_3 Repeat 801 848 5.1e-32 110.5 Pentatricopeptide repeat domain
XP_057771716.1 Pfam PF13041 PPR_2 Repeat 801 849 1.1e-104 343.1 PPR repeat family
XP_057771716.1 Pfam PF01535 PPR Repeat 805 832 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 839 865 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF01535 PPR Repeat 877 900 4.7e-79 256.0 PPR repeat
XP_057771716.1 Pfam PF20431 E_motif Repeat 924 980 1.4e-13 51.5 E motif
XP_057771717.1 Pfam PF12854 PPR_1 Repeat 227 257 1.6e-51 172.4 PPR repeat
XP_057771717.1 Pfam PF13041 PPR_2 Repeat 228 266 1.3e-106 349.3 PPR repeat family
XP_057771717.1 Pfam PF01535 PPR Repeat 231 260 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF13041 PPR_2 Repeat 294 341 1.3e-106 349.3 PPR repeat family
XP_057771717.1 Pfam PF13812 PPR_3 Repeat 294 341 1.8e-32 111.9 Pentatricopeptide repeat domain
XP_057771717.1 Pfam PF01535 PPR Repeat 297 327 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 370 395 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF13041 PPR_2 Repeat 396 443 1.3e-106 349.3 PPR repeat family
XP_057771717.1 Pfam PF01535 PPR Repeat 398 428 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 471 496 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF13041 PPR_2 Repeat 497 544 1.3e-106 349.3 PPR repeat family
XP_057771717.1 Pfam PF01535 PPR Repeat 499 529 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 572 599 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 702 730 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 775 800 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF13812 PPR_3 Repeat 801 848 1.8e-32 111.9 Pentatricopeptide repeat domain
XP_057771717.1 Pfam PF13041 PPR_2 Repeat 801 849 1.3e-106 349.3 PPR repeat family
XP_057771717.1 Pfam PF01535 PPR Repeat 805 832 2.2e-74 241.4 PPR repeat
XP_057771717.1 Pfam PF01535 PPR Repeat 839 865 2.2e-74 241.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057915733.1
CCGAATATTTTCGCGGCAAAGAGATGGAGAGAGTGGTGTTGGCGTCAAATCTCTTTGCCAAAGGAGAAGATGAATTCATCTCTGATTCAGCTGAATGGTGGGAGTATATATGAAAGTTTTCATTCAATGATTTAGTATTTTCTCATTTCAAAGTTATACTATTACATTTAGCCGATGAAATGCTACCAAGATATAGCAAGATCAGGCCCCAGCGACTAAACCCAAAATCTCCATTTTCGCATCTCCAATCCGAATTTTCA...
XM_057915734.1
CCGAATATTTTCGCGGCAAAGAGATGGAGAGAGTGGTGTTGGCGTCAAATCTCTTTGCCAAAGGAGAAGATGAATTCATCTCTGATTCAGCTGAATGGTGGGAGTATATATGAAAGTTTTCATTCAATGATTTAGTATTTTCTCATTTCAAAGTTATACTATTACATTTAGCCGATGAAATGCTACCAAGATATAGCAAGATCAGGCCCCAGCGACTAAACCCAAAATCTCCATTTTCGCATCTCCAATCCGAATTTTCA...

CDS

2 records

下载 CDS FASTA
LOC130991478
ATGCTACCAAGATATAGCAAGATCAGGCCCCAGCGACTAAACCCAAAATCTCCATTTTCGCATCTCCAATCCGAATTTTCAACTCTCGATCCCGTTAAAGATAAAATATTTCGTCAATCTCCGTCTCAAGAGCTCGATTTTTACGCCTATCTATTGGAGAAATGCTTGGGGGAATGCAAGAAGATCCAAACCCGCCAAGTGTTCGACAGAATTCCCGAAAGACTGAGTTTTTCATTGAAGGCGGCGAAAGCGATTCACGC...
LOC130991478
ATGCTACCAAGATATAGCAAGATCAGGCCCCAGCGACTAAACCCAAAATCTCCATTTTCGCATCTCCAATCCGAATTTTCAACTCTCGATCCCGTTAAAGATAAAATATTTCGTCAATCTCCGTCTCAAGAGCTCGATTTTTACGCCTATCTATTGGAGAAATGCTTGGGGGAATGCAAGAAGATCCAAACCCGCCAAGTGTTCGACAGAATTCCCGAAAGACTGAGTTTTTCATTGAAGGCGGCGAAAGCGATTCACGC...

Protein

2 records

下载 Protein FASTA
XP_057771716.1
MLPRYSKIRPQRLNPKSPFSHLQSEFSTLDPVKDKIFRQSPSQELDFYAYLLEKCLGECKKIQTRQVFDRIPERLSFSLKAAKAIHAQSLKFGISSERELGNSILDLYSKCGHMDYTRKVFLHLEKRDELAWNSVMSMKSRRRLFGDVREDFASMWSCGVAGNQFTFAIVLSACAKLMDVDLGKQAHCAAMKLGFETDAYCEGALVDMYAKCGYLAFAKRIFDVAVYPDRVAWTSMISGLAQAGLISEALRVFEQMQEAG...
XP_057771717.1
MLPRYSKIRPQRLNPKSPFSHLQSEFSTLDPVKDKIFRQSPSQELDFYAYLLEKCLGECKKIQTRQVFDRIPERLSFSLKAAKAIHAQSLKFGISSERELGNSILDLYSKCGHMDYTRKVFLHLEKRDELAWNSVMSMKSRRRLFGDVREDFASMWSCGVAGNQFTFAIVLSACAKLMDVDLGKQAHCAAMKLGFETDAYCEGALVDMYAKCGYLAFAKRIFDVAVYPDRVAWTSMISGLAQAGLISEALRVFEQMQEAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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