当前解析结果
SmilChr07G000289| 统一新 Gene ID | SmilChr07G000289 |
|---|---|
| 名称 | SmilChr07G000289 |
| 描述 | phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1879590 - 1931892 / + |
| NCBI Gene ID | LOC130991483 |
|---|---|
| GeneID | 130991483 |
| locus_tag | - |
| NCBI Name | LOC130991483 |
| 原始查询 | SmilChr07G000289 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like |
| 产物 | phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like |
| Arabidopsis | AT1G05370 (AT1G05370)Sec14p-like phosphatidylinositol transfer family protein [Source:NCBI gene (formerly Entrezgene);Acc:837038] identity=59.9; qcov=1.02; evalue=4.95e-178; confidence=high |
| Rice | Os03g0219100- identity=57.1; qcov=1.03; evalue=2.77e-163; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00650 (CRAL_TRIO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991483 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.60000 | XP_057771720.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057771720.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771720.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771720.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771720.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1929006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr7:1929009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B125,B134,B86,D8 |
Chr7:1929230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B88 |
Chr7:1929244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B41,B76,C10 |
Chr7:1929663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr7:1930043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:1930067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C45 |
Chr7:1930786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1930811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:1930967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,C12,C27,C35 |
Chr7:1930979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1930993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B42,B43,B62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771720.1PF00650
CRAL_TRIO 86-199 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771720.1 |
Pfam | PF00650 |
CRAL_TRIO | Domain | 86 | 199 | 2.9e-22 | 79.9 | CRAL/TRIO domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。