当前解析结果
SmilChr07G000299| 统一新 Gene ID | SmilChr07G000299 |
|---|---|
| 名称 | SmilChr07G000299 |
| 描述 | heat shock 70 kDa protein 8 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1969363 - 1972484 / + |
| NCBI Gene ID | LOC130991490 |
|---|---|
| GeneID | 130991490 |
| locus_tag | - |
| NCBI Name | LOC130991490 |
| 原始查询 | SmilChr07G000299 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock 70 kDa protein 8 |
| 产物 | heat shock 70 kDa protein 8 |
| Arabidopsis | AT2G32120 (HSP70T-2)heat-shock protein 70T-2 [Source:NCBI gene (formerly Entrezgene);Acc:817771] identity=74; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0218500- identity=68.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | - |
| Pfam | PF00012 (HSP70) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991490 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057771730.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057771730.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057771730.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771730.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771730.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1970520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B130 |
Chr7:1970550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B2,C61,C87,D11 |
Chr7:1970653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:1970823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B101,B47 |
Chr7:1970856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:1970892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr7:1970905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B34,C48 |
Chr7:1970967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C55 |
Chr7:1971154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,C60,C74 |
Chr7:1971222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,B81 |
Chr7:1971242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr7:1971294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771730.1PF00012
HSP70 28-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771730.1 |
Pfam | PF00012 |
HSP70 | Family | 28 | 519 | 1.4e-94 | 318.2 | Hsp70 protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。