当前解析结果
SmilChr07G000303| 统一新 Gene ID | SmilChr07G000303 |
|---|---|
| 名称 | SmilChr07G000303 |
| 描述 | amine oxidase [copper-containing] alpha 2, peroxisomal-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1994849 - 1998318 / + |
| NCBI Gene ID | LOC130991497 |
|---|---|
| GeneID | 130991497 |
| locus_tag | - |
| NCBI Name | LOC130991497 |
| 原始查询 | SmilChr07G000303 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | amine oxidase [copper-containing] alpha 2, peroxisomal-like |
| 产物 | amine oxidase [copper-containing] alpha 2%2C peroxisomal-like |
| Arabidopsis | AT1G31690 (AT1G31690)Copper amine oxidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840056] identity=54.1; qcov=0.982; evalue=0; confidence=high |
| Rice | Os06g0338200 (OsDAO1)- identity=49.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0008131 (primary methylamine oxidase activity); GO:0009308 (amine metabolic process); GO:0048038 (quinone binding) |
| KEGG | - |
| Pfam | PF01179 (Cu_amine_oxid); PF02727 (Cu_amine_oxidN2); PF02728 (Cu_amine_oxidN3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991497 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.40000 | XP_057771734.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057771734.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057771734.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771734.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771734.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1994862 |
A |
AAT |
2bp_insertion | frameshift_variant | 9 | A11,A21,B109,B12,B124,B13,C26,C39,C45 |
Chr7:1994876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B46,B90,B92,C15,C83 |
Chr7:1994958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B81,C37,C87,D11 |
Chr7:1995003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,D10 |
Chr7:1995005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:1995019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr7:1995054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B119,B44,B75,C31,C65 |
Chr7:1995087 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A4 |
Chr7:1995087 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A4 |
Chr7:1995105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B84,C46 |
Chr7:1995153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C8 |
Chr7:1995166 |
AC |
A |
1bp_deletion | frameshift_variant | 20 | A7,B1,B102,B42,B43,B46,B62,B64,B8,B90,C12,C16,C29,C51,C55,C59,C67,C71,C73,C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771734.1PF02727
Cu_amine_oxidN2 31-112 aa
PF02728
Cu_amine_oxidN3 130-225 aa
PF01179
Cu_amine_oxid 247-659 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771734.1 |
Pfam | PF02727 |
Cu_amine_oxidN2 | Domain | 31 | 112 | 3.7e-16 | 59.9 | Copper amine oxidase, N2 domain |
XP_057771734.1 |
Pfam | PF02728 |
Cu_amine_oxidN3 | Domain | 130 | 225 | 2.2e-18 | 67.1 | Copper amine oxidase, N3 domain |
XP_057771734.1 |
Pfam | PF01179 |
Cu_amine_oxid | Domain | 247 | 659 | 2.9e-122 | 409.0 | Copper amine oxidase, enzyme domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。