当前解析结果
SmilChr07G000308| 统一新 Gene ID | SmilChr07G000308 |
|---|---|
| 名称 | SmilChr07G000308 |
| 描述 | probable linoleate 9S-lipoxygenase 5 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2021890 - 2026934 / - |
| NCBI Gene ID | LOC130991503 |
|---|---|
| GeneID | 130991503 |
| locus_tag | - |
| NCBI Name | LOC130991503 |
| 原始查询 | SmilChr07G000308 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable linoleate 9S-lipoxygenase 5 |
| 产物 | probable linoleate 9S-lipoxygenase 5 |
| Arabidopsis | AT3G22400 (LOX5)PLAT/LH2 domain-containing lipoxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821808] identity=64.9; qcov=0.98; evalue=0; confidence=high |
| Rice | Os03g0700700 (OsLOX1)- identity=60.3; qcov=0.976; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen); GO:0034440 (lipid oxidation); GO:0046872 (metal ion binding) |
| KEGG | smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00305 (Lipoxygenase); PF01477 (PLAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991503 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057771739.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057771739.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057771739.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771739.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771739.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2022159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B114,B128,B95,C13 |
Chr7:2022160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:2022162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr7:2022196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:2022252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B38,B39,B95,C13 |
Chr7:2022281 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B58,C15 |
Chr7:2022331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C15 |
Chr7:2022354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:2022361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:2022368 |
GAC |
G |
2bp_deletion | frameshift_variant | 5 | A18,B140,B33,B90,D6 |
Chr7:2022368 |
GAC |
G |
2bp_deletion | CDS_variant | 5 | A18,B140,B33,B90,D6 |
Chr7:2022383 |
G |
GTT |
2bp_insertion | frameshift_variant | 1 | B90 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771739.1PF01477
PLAT 85-176 aa
PF00305
Lipoxygenase 191-860 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771739.1 |
Pfam | PF01477 |
PLAT | Domain | 85 | 176 | 9e-16 | 59.4 | PLAT/LH2 domain |
XP_057771739.1 |
Pfam | PF00305 |
Lipoxygenase | Domain | 191 | 860 | 0 | 1031.8 | Lipoxygenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。