Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000311`

染色体: Chr07 坐标: 2058135-2065233 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000311`
名称	SmilChr07G000311
描述	protein TIME FOR COFFEE
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2058135 - 2065233 / `-`

ID 对照

NCBI Gene ID	`LOC130991505`
GeneID	`130991505`
locus_tag	`-`
NCBI Name	`LOC130991505`
原始查询	`SmilChr07G000311`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	protein TIME FOR COFFEE
产物	protein TIME FOR COFFEE
Arabidopsis	`AT3G22380` (TIC) time for coffee [Source:NCBI gene (formerly Entrezgene);Acc:821807] identity=37.8; qcov=0.783; evalue=4.66e-169; confidence=medium
Rice	`Os07g0571100` - identity=31.4; qcov=0.669; evalue=4.63e-68; confidence=low
GO	GO:0005634 (nucleus); GO:0042752 (regulation of circadian rhythm)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130991505

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771741.1`
2	Chromosome	染色体	0.00000	`XP_057771741.1`
3	Centromere	着丝粒	0.00000	`XP_057771741.1`
4	Chromatin	染色质	0.00000	`XP_057771741.1`
5	Telomere	端粒	0.00000	`XP_057771741.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2058705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B78
`Chr7:2058714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C8
`Chr7:2058873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2058877`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A11,A16,B3,C24
`Chr7:2058877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,A16,B3,C24
`Chr7:2058888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B44,B80
`Chr7:2058924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr7:2058939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B3,B92,C24
`Chr7:2058946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr7:2058955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:2058966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B140,B24,C2
`Chr7:2059073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,D6

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057915762.1
GATGATGAGATTGAGACAGCAGGATAAAAAAAAGCTTCATTTATAGGGGTAGAGAGAGAGAGAGAAGTAGAGAAAGAGAGAGAGAGAGAGCTGAATTAGGGGATTTGTGGAAGAGGAGGAGCCCATTTGGAGAGAAAAAGATATTAGGAGAAAAAAGATTGTTGTTTTATCCGCCGAATTCATTCTGAATCTTGATTTTCCGGCGAGACTCATCTCCTTCTCCGGCGAATTATGCTATAGCGACCTCTGATGAGATATCT...

XM_057915759.1
GATGATGAGATTGAGACAGCAGGATAAAAAAAAGCTTCATTTATAGGGGTAGAGAGAGAGAGAGAAGTAGAGAAAGAGAGAGAGAGAGAGCTGAATTAGGGGATTTGTGGAAGAGGAGGAGCCCATTTGGAGAGAAAAAGATATTAGGAGAAAAAAGATTGTTGTTTTATCCGCCGAATTCATTCTGAATCTTGATTTTCCGGCGAGACTCATCTCCTTCTCCGGCGAATTATGCTATAGCGACCTCTGATGAGATATCT...

CDS

4 records

下载 CDS FASTA

LOC130991505
ATGGACAGAAACAGAGAAGCCAGAAGAGCTAGTATCGTCGGCTCTAATGGCTTCAACCGCCGCCGCCACCGAACCAACAGTCTCAGAGACTCTCCAGATGAAGATGGGGGGCCGGAGTTGCAGGAATCCGTGAGGTTAAGAGATAGAGTGAAGAAAGATCGGGATCGAGAAAGGGAGAGGGATAGAGAGAGGGAGCGGGAGAGAGAGAGGGAAAGGGAGAGGGAGAGAGAAAGAGATTTGAGAGAAAGGTCTAGCCGGAG...

Protein

4 records

下载 Protein FASTA

XP_057771741.1
MDRNREARRASIVGSNGFNRRRHRTNSLRDSPDEDGGPELQESVRLRDRVKKDRDRERERDRERERERERERERERERDLRERSSRSKRRRGGDETSEESVNDEEDEEDEENAAAAAAAAAGGVRLLTQAVGSVPNHHHGHLSSHHHGGHSSSFSQPQHNSNINTSNTVSSNHHLQHRKSFPPTSSTAAKISRAPPVWKSGDEMISAPVPRKARSASTKRSHDWISISSNNNSGGVSGGEPNLGSSPARQVVGVGAGATP...

XP_057771742.1
MDRNREARRASIVGSNGFNRRRHRTNSLRDSPDEDGGPELQESVRLRDRVKKDRDRERERDRERERERERERERERERDLRERSSRSKRRRGGDETSEESVNDEEDEEDEENAAAAAAAAAGGVRLLTQAVGSVPNHHHGHLSSHHHGGHSSSFSQPQHNSNINTSNTVSSNHHLQHRKSFPPTSSTAAKISRAPPVWKSGDEMISAPVPRKARSASTKRSHDWISISSNNNSGGVSGGEPNLGSSPARQVVGVGAGATP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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